Masher: Mapping Long(er) Reads with Hash-based Genome Indexing on GPUs. - Anas Abu-Doleh; Erik Saule; Kamer Kaya; Ümit V. Çatalyürek (BCB, 2013)

Extracting Maximal Exact Matches on GPU. - Anas Abu-Doleh; Kamer Kaya; Mohamed Abouelhoda; Ümit V. Çatalyürek (IPDPS Workshops, 2014)

Spaler: Spark and GraphX based de novo genome assembler. - Anas Abu-Doleh; Ümit V. Çatalyürek (IEEE BigData, 2015)

A resource provisioning framework for bioinformatics applications in multi-cloud environments. - Izzet F. Senturk; Ponnuraman Balakrishnan; Anas Abu-Doleh; Kamer Kaya; Qutaibah M. Malluhi; Ümit V. Çatalyürek (Future Gener. Comput. Syst., 2018)

XgCPred: Cell type classification using XGBoost-CNN integration and exploiting gene expression imaging in single-cell RNAseq data. - Anas Abu-Doleh; Amjed Al Fahoum (Comput. Biol. Medicine, 2024)

GenoCGC: A Hybrid CNN and Graph-based Transformer Model for Genomic Sequence Classification. - Anas Abu-Doleh (ICIT, 2025)

Recognition of autism in subcortical brain volumetric images using autoencoding-based region selection method and Siamese Convolutional Neural Network. - Anas Abu-Doleh; Isam Abu-Qasmieh; Hiam Al-quran; Ihssan S. Masad; Lamis R. Banyissa; Marwa Alhaj Ahmad (Int. J. Medical Informatics, 2025)