Supporting the SBML layout extension. - Anastasia Deckard; Frank T. Bergmann; Herbert M. Sauro (Bioinform., 2006)

Design and analysis of large-scale biological rhythm studies: a comparison of algorithms for detecting periodic signals in biological data. - Anastasia Deckard; Ron C. Anafi; John B. Hogenesch; Steven B. Haase; John Harer (Bioinform., 2013)

SW1PerS: Sliding windows and 1-persistence scoring; discovering periodicity in gene expression time series data. - Jose A. Perea; Anastasia Deckard; Steven B. Haase; John Harer (BMC Bioinform., 2015)

Conservation of dynamic characteristics of transcriptional regulatory elements in periodic biological processes. - Francis C. Motta; Robert C. Moseley; Bree Cummins; Anastasia Deckard; Steven B. Haase (BMC Bioinform., 2022)

Experimental guidance for discovering genetic networks through hypothesis reduction on time series. - Breschine Cummins; Francis C. Motta; Robert C. Moseley; Anastasia Deckard; Sophia Campione; Marcio Gameiro; Tomás Gedeon; Konstantin Mischaikow; Steven B. Haase (PLoS Comput. Biol., 2022)