Results of the fifth edition of the BioASQ Challenge. - Anastasios Nentidis; Konstantinos Bougiatiotis; Anastasia Krithara; Georgios Paliouras; Ioannis A. Kakadiaris (BioNLP, 2017)

iASiS: Towards Heterogeneous Big Data Analysis for Personalized Medicine. - Anastasia Krithara; Fotis Aisopos; Vassiliki Rentoumi; Anastasios Nentidis; Konstantinos Bougiatiotis; Maria-Esther Vidal; Ernestina Menasalvas; Alejandro Rodríguez González; Eleftherios Samaras; Peter Garrard; Maria Torrente; Mariano Provencio Pulla; et al. (CBMS, 2019)

Results of the Seventh Edition of the BioASQ Challenge. - Anastasios Nentidis; Konstantinos Bougiatiotis; Anastasia Krithara; Georgios Paliouras (PKDD/ECML Workshops (2), 2019)

Semantic integration of disease-specific knowledge. - Anastasios Nentidis; Konstantinos Bougiatiotis; Anastasia Krithara; Georgios Paliouras (CoRR, 2019)

Drug-Drug Interaction Prediction on a Biomedical Literature Knowledge Graph. - Konstantinos Bougiatiotis; Fotis Aisopos; Anastasios Nentidis; Anastasia Krithara; Georgios Paliouras (AIME, 2020)

iASiS Open Data Graph: Automated Semantic Integration of Disease-Specific Knowledge. - Anastasios Nentidis; Konstantinos Bougiatiotis; Anastasia Krithara; Georgios Paliouras (CBMS, 2020)

Overview of BioASQ 2020: The Eighth BioASQ Challenge on Large-Scale Biomedical Semantic Indexing and Question Answering. - Anastasios Nentidis; Anastasia Krithara; Konstantinos Bougiatiotis; Martin Krallinger; Carlos Rodríguez Penagos; Marta Villegas; Georgios Paliouras (CLEF, 2020)

Overview of BioASQ 8a and 8b: Results of the Eighth Edition of the BioASQ Tasks a and b. - Anastasios Nentidis; Anastasia Krithara; Konstantinos Bougiatiotis; Georgios Paliouras (CLEF (Working Notes), 2020)

Overview of MESINESP, a Spanish Medical Semantic Indexing Task within BioASQ 2020. - Carlos Rodríguez Penagos; Anastasios Nentidis; Aitor Gonzalez-Agirre; Alejandro Asensio; Jordi Armengol-Estapé; Anastasia Krithara; Marta Villegas; Georgios Paliouras; Martin Krallinger (CLEF (Working Notes), 2020)

BioASQ at CLEF2020: Large-Scale Biomedical Semantic Indexing and Question Answering. - Martin Krallinger; Anastasia Krithara; Anastasios Nentidis; Georgios Paliouras; Marta Villegas (ECIR (2), 2020)

Error detection in Knowledge Graphs: Path Ranking, Embeddings or both? - Romanos Fasoulis; Konstantinos Bougiatiotis; Fotis Aisopos; Anastasios Nentidis; Georgios Paliouras (CoRR, 2020)

Beyond MeSH: Fine-grained semantic indexing of biomedical literature based on weak supervision. - Anastasios Nentidis; Anastasia Krithara; Grigorios Tsoumakas; Georgios Paliouras (Inf. Process. Manag., 2020)

Overview of BioASQ 2021-MESINESP track. Evaluation of advance hierarchical classification techniques for scientific literature, patents and clinical trials. - Luis Gascó; Anastasios Nentidis; Anastasia Krithara; Darryl Estrada-Zavala; Renato Toshiyuki Murasaki; Elena Primo-Peña; Cristina Bojo-Canales; Georgios Paliouras; Martin Krallinger (CLEF (Working Notes), 2021)

Overview of BioASQ 2021: The Ninth BioASQ Challenge on Large-Scale Biomedical Semantic Indexing and Question Answering. - Anastasios Nentidis; Georgios Katsimpras; Eirini Vandorou; Anastasia Krithara; Luis Gascó; Martin Krallinger; Georgios Paliouras (CLEF, 2021)

Overview of BioASQ Tasks 9a, 9b and Synergy in CLEF2021. - Anastasios Nentidis; Georgios Katsimpras; Eirini Vandorou; Anastasia Krithara; Georgios Paliouras (CLEF (Working Notes), 2021)

BioASQ at CLEF2021: Large-Scale Biomedical Semantic Indexing and Question Answering. - Anastasia Krithara; Anastasios Nentidis; Georgios Paliouras; Martin Krallinger; Antonio Miranda (ECIR (2), 2021)

What is all this new MeSH about? Exploring the semantic provenance of new descriptors in the MeSH thesaurus. - Anastasios Nentidis; Anastasia Krithara; Grigorios Tsoumakas; Georgios Paliouras (CoRR, 2021)

Harvesting the Public MeSH Note field. - Anastasios Nentidis; Anastasia Krithara; Grigorios Tsoumakas; Georgios Paliouras (CoRR, 2021)

What is all this new MeSH about? - Anastasios Nentidis; Anastasia Krithara; Grigorios Tsoumakas; Georgios Paliouras (Int. J. Digit. Libr., 2021)

Overview of DisTEMIST at BioASQ: Automatic detection and normalization of diseases from clinical texts: results, methods, evaluation and multilingual resources. - Antonio Miranda-Escalada; Luis Gascó; Salvador Lima-López; Eulàlia Farré-Maduell; Darryl Estrada; Anastasios Nentidis; Anastasia Krithara; Georgios Katsimpras; Georgios Paliouras; Martin Krallinger (CLEF (Working Notes), 2022)

Overview of BioASQ 2022: The Tenth BioASQ Challenge on Large-Scale Biomedical Semantic Indexing and Question Answering. - Anastasios Nentidis; Georgios Katsimpras; Eirini Vandorou; Anastasia Krithara; Antonio Miranda-Escalada; Luis Gascó; Martin Krallinger; Georgios Paliouras (CLEF, 2022)

Overview of BioASQ Tasks 10a, 10b and Synergy10 in CLEF2022. - Anastasios Nentidis; Georgios Katsimpras; Eirini Vandorou; Anastasia Krithara; Georgios Paliouras (CLEF (Working Notes), 2022)

BioASQ at CLEF2022: The Tenth Edition of the Large-scale Biomedical Semantic Indexing and Question Answering Challenge. - Anastasios Nentidis; Anastasia Krithara; Georgios Paliouras; Luis Gascó; Martin Krallinger (ECIR (2), 2022)

Modeling the off-target effects of CRISPR-Cas9 experiments for the treatment of Duchenne Muscular Dystrophy. - Eleni Koutsoni; Vasileios Konstantakos; Anastasios Nentidis; Anastasia Krithara; Georgios Paliouras (SETN, 2022)

CRISPRedict: a CRISPR-Cas9 web tool for interpretable efficiency predictions. - Vasileios Konstantakos; Anastasios Nentidis; Anastasia Krithara; Georgios Paliouras (Nucleic Acids Res., 2022)

Overview of MedProcNER Task on Medical Procedure Detection and Entity Linking at BioASQ 2023. - Salvador Lima-López; Eulàlia Farré-Maduell; Luis Gascó; Anastasios Nentidis; Anastasia Krithara; Georgios Katsimpras; Georgios Paliouras; Martin Krallinger (CLEF (Working Notes), 2023)

Overview of BioASQ 2023: The Eleventh BioASQ Challenge on Large-Scale Biomedical Semantic Indexing and Question Answering. - Anastasios Nentidis; Georgios Katsimpras; Anastasia Krithara; Salvador Lima-López; Eulàlia Farré-Maduell; Luis Gascó; Martin Krallinger; Georgios Paliouras (CLEF, 2023)

Overview of BioASQ Tasks 11b and Synergy11 in CLEF2023. - Anastasios Nentidis; Georgios Katsimpras; Anastasia Krithara; Georgios Paliouras (CLEF (Working Notes), 2023)

BioASQ at CLEF2023: The Eleventh Edition of the Large-Scale Biomedical Semantic Indexing and Question Answering Challenge. - Anastasios Nentidis; Anastasia Krithara; Georgios Paliouras; Eulàlia Farré-Maduell; Salvador Lima-López; Martin Krallinger (ECIR (3), 2023)

Large-scale fine-grained semantic indexing of biomedical literature based on weakly-supervised deep learning. - Anastasios Nentidis; Thomas Chatzopoulos; Anastasia Krithara; Grigorios Tsoumakas; Georgios Paliouras (CoRR, 2023)

The road from manual to automatic semantic indexing of biomedical literature: a 10 years journey. - Anastasia Krithara; James G. Mork; Anastasios Nentidis; Georgios Paliouras (Frontiers Res. Metrics Anal., 2023)

Large-scale investigation of weakly-supervised deep learning for the fine-grained semantic indexing of biomedical literature. - Anastasios Nentidis; Thomas Chatzopoulos; Anastasia Krithara; Grigorios Tsoumakas; Georgios Paliouras (J. Biomed. Informatics, 2023)

Overview of MultiCardioNER task at BioASQ 2024 on Medical Specialty and Language Adaptation of Clinical NER Systems for Spanish, English and Italian. - Salvador Lima-López; Eulàlia Farré-Maduell; Jan Rodríguez-Miret; Miguel Rodríguez-Ortega; Livia Lilli; Jacopo Lenkowicz; Giovanna Ceroni; Jonathan Kossof; Anoop Shah; Anastasios Nentidis; Anastasia Krithara; Georgios Katsimpras; et al. (CLEF (Working Notes), 2024)

Overview of BioASQ 2024: The Twelfth BioASQ Challenge on Large-Scale Biomedical Semantic Indexing and Question Answering. - Anastasios Nentidis; Georgios Katsimpras; Anastasia Krithara; Salvador Lima-López; Eulàlia Farré-Maduell; Martin Krallinger; Natalia V. Loukachevitch; Vera Davydova; Elena Tutubalina; Georgios Paliouras (CLEF (2), 2024)

Overview of BioASQ Tasks 12b and Synergy12 in CLEF2024. - Anastasios Nentidis; Georgios Katsimpras; Anastasia Krithara; Georgios Paliouras (CLEF (Working Notes), 2024)

Zero-Shot Relabeling of Weak Labels for Fine-Grained Semantic Indexing of Biomedical Literature. - Anastasios Nentidis; Anastasia Krithara; Grigorios Tsoumakas; Georgios Paliouras (ECAI, 2024)

BioASQ at CLEF2024: The Twelfth Edition of the Large-Scale Biomedical Semantic Indexing and Question Answering Challenge. - Anastasios Nentidis; Anastasia Krithara; Georgios Paliouras; Martin Krallinger; Luis Gascó Sánchez; Salvador Lima-López; Eulàlia Farré; Natalia V. Loukachevitch; Vera Davydova; Elena Tutubalina (ECIR (5), 2024)

Detecting and Fixing Inconsistency of Large Knowledge Graphs. - Charilaos Akasiadis; Anastasios Nentidis; Angelos Charalambidis; Alexander Artikis (SETN, 2024)

BioASQ Synergy: a dialogue between question-answering systems and biomedical experts for promoting COVID-19 research. - Anastasia Krithara; Anastasios Nentidis; Eirini Vandorou; Georgios Katsimpras; Yannis Almirantis; Magda Arnal; Adomas Bunevicius; Eulàlia Farré-Maduell; Maya Kassiss; Vasileios Konstantakos; Sherri Matis-Mitchell; Dimitris Polychronopoulos; et al. (J. Am. Medical Informatics Assoc., 2024)

BioASQ at CLEF2025: The Thirteenth Edition of the Large-Scale Biomedical Semantic Indexing and Question Answering Challenge. - Anastasios Nentidis; Georgios Katsimpras; Anastasia Krithara; Martin Krallinger; Miguel Rodríguez-Ortega; Natalia V. Loukachevitch; Andrey Sakhovskiy; Elena Tutubalina; Grigorios Tsoumakas; George Giannakoulas; Alexandra Bekiaridou; Athanasios Samaras; et al. (ECIR (5), 2025)

Dealing with Inconsistency for Reasoning over Knowledge Graphs: A Survey. - Anastasios Nentidis; Charilaos Akasiadis; Angelos Charalambidis; Alexander Artikis (CoRR, 2025)