Decoupling Environment-Dependent and Independent Genetic Robustness across Bacterial Species. - Shiri Freilich; Anat Kreimer; Elhanan Borenstein; Uri Gophna; Roded Sharan; Eytan Ruppin (PLoS Comput. Biol., 2010)

NetCmpt: a network-based tool for calculating the metabolic competition between bacterial species. - Anat Kreimer; Adi Doron-Faigenboim; Elhanan Borenstein; Shiri Freilich (Bioinform., 2012)

NetCooperate: a network-based tool for inferring host-microbe and microbe-microbe cooperation. - Roie Levy; Rogan Carr; Anat Kreimer; Shiri Freilich; Elhanan Borenstein (BMC Bioinform., 2015)

Differential variability analysis of single-cell gene expression data. - Jiayi Liu; Anat Kreimer; Wei Vivian Li (Briefings Bioinform., 2023)