Automated analysis of interatomic contacts in proteins. - Vladimir Sobolev; Anatoly A. Sorokin; Jaime Prilusky; Enrique E. Abola; Marvin Edelman (Bioinform., 1999)

The Pathway Editor: A tool for managing complex biological networks. - Anatoly A. Sorokin; Kirill Paliy; Alexey Selkov; Oleg V. Demin; Serge Dronov; Peter Ghazal; Igor Goryanin (IBM J. Res. Dev., 2006)

Electrostatic Properties of Promoter Recognized by e. Coli Rna Polymerase Esigma70. - Anatoly A. Sorokin; Alexander A. Osypov; Timur R. Dzhelyadin; Petr M. Beskaravainy; Svetlana G. Kamzolova (J. Bioinform. Comput. Biol., 2006)

A Graphical Notation to describe the Logical Interactions of Biological Pathways. - Stuart L. Moodie; Anatoly A. Sorokin; Igor Goryanin; Peter Ghazal (J. Integr. Bioinform., 2006)

A fragile metabolic network adapted for cooperation in the symbiotic bacterium Buchnera aphidicola. - Gavin H. Thomas; Jeremy Zucker; Sandy J. Macdonald; Anatoly A. Sorokin; Igor Goryanin; Angela E. Douglas (BMC Syst. Biol., 2009)

Microarray data can predict diurnal changes of starch content in the picoalga Ostreococcus. - Oksana Sorokina; Florence Corellou; David Dauvillée; Anatoly A. Sorokin; Igor Goryanin; Steven Ball; François-Yves Bouget; Andrew J. Millar (BMC Syst. Biol., 2011)

Software support for SBGN maps: SBGN-ML and LibSBGN. - Martijn P. van Iersel; Alice Villéger; Tobias Czauderna; Sarah E. Boyd; Frank T. Bergmann; Augustin Luna; Emek Demir; Anatoly A. Sorokin; Ugur Dogrusöz; Yukiko Matsuoka; Akira Funahashi; Mirit I. Aladjem; et al. (Bioinform., 2012)

SBSI: an extensible distributed software infrastructure for parameter estimation in systems biology. - Richard R. Adams; Allan B. Clark; Azusa Yamaguchi; Neil Hanlon; Nikos Tsorman; Shakir Ali; Galina Lebedeva; Alexey N. Goltsov; Anatoly A. Sorokin; Ozgur E. Akman; Carl Troein; Andrew J. Millar; et al. (Bioinform., 2013)

A simulator for spatially extended kappa models. - Oksana Sorokina; Anatoly A. Sorokin; J. Douglas Armstrong; Vincent Danos (Bioinform., 2013)

RKappa: Statistical Sampling Suite for Kappa Models. - Anatoly A. Sorokin; Oksana Sorokina; J. Douglas Armstrong (HSB, 2014)

Systems Biology Graphical Notation: Activity Flow language Level 1 Version 1.2 . - Huaiyu Mi; Falk Schreiber; Stuart L. Moodie; Tobias Czauderna; Emek Demir; Robin Haw; Augustin Luna; Nicolas Le Novère; Anatoly A. Sorokin; Alice Villéger (J. Integr. Bioinform., 2015)

Systems Biology Graphical Notation: Entity Relationship language Level 1 Version 2. - Anatoly A. Sorokin; Nicolas Le Novère; Augustin Luna; Tobias Czauderna; Emek Demir; Robin Haw; Huaiyu Mi; Stuart L. Moodie; Falk Schreiber; Alice Villéger (J. Integr. Bioinform., 2015)

Structural distinctions of fast and slow bacterial luciferases revealed by phylogenetic analysis. - Anna A. Deeva; Evgenia A. Temlyakova; Anatoly A. Sorokin; Elena V. Nemtseva; Valentina A. Kratasyuk (Bioinform., 2016)

ASAR Database: An R Tool for Visual Analysis and Storage of Metagenomes. - Askarbek N. Orakov; Nazgul Sakenova; Igor Goryanin; Anatoly A. Sorokin (BIOINFORMATICS, 2018)

ASAR: visual analysis of metagenomes in R. - Askarbek N. Orakov; Nazgul Sakenova; Anatoly A. Sorokin; Igor Goryanin (Bioinform., 2018)

Bacterial promoter prediction: Selection of dynamic and static physical properties of DNA for reliable sequence classification. - Artem Ryasik; Mikhail A. Orlov; Evgenia Zykova; Timofei Ermak; Anatoly A. Sorokin (J. Bioinform. Comput. Biol., 2018)

Systems Biology Graphical Notation: Process Description language Level 1 Version 2.0. - Adrien Rougny; Vasundra Touré; Stuart L. Moodie; Irina Balaur; Tobias Czauderna; Hanna Borlinghaus; Ugur Dogrusoz; Alexander Mazein; Andreas Dräger; Michael L. Blinov; Alice Villéger; Robin Haw; et al. (J. Integr. Bioinform., 2019)

Using ASAR for Analysis of Electrogenic and Human Gut Microbial Communities. - Igor Goryanin; Anatoly A. Sorokin; Olga Vasieva (BIOINFORMATICS, 2020)

DNA sequence, physics, and promoter function: Analysis of high-throughput data On T7 promoter variants activity. - Mikhail A. Orlov; Anatoly A. Sorokin (J. Bioinform. Comput. Biol., 2020)

SBGN Bricks Ontology as a tool to describe recurring concepts in molecular networks. - Adrien Rougny; Vasundra Touré; John Albanese; Dagmar Waltemath; Denis Shirshov; Anatoly A. Sorokin; Gary D. Bader; Michael L. Blinov; Alexander Mazein (Briefings Bioinform., 2021)

The software for interactive evaluation of mass spectra stability and reproducibility. - Evgeny S. Zhvansky; Anatoly A. Sorokin; Denis S. Bormotov; Konstantin V. Bocharov; Denis S. Zavorotnyuk; Daniil G. Ivanov; Eugene N. Nikolaev; Igor A. Popov (Bioinform., 2021)

Lipid Profiles of Human Brain Tumors Obtained by High-Resolution Negative Mode Ambient Mass Spectrometry. - Denis S. Zavorotnyuk; Stanislav I. Pekov; Anatoly A. Sorokin; Denis S. Bormotov; Nikita Levin; Evgeny S. Zhvansky; Savva Semenov; Polina Strelnikova; Konstantin V. Bocharov; Alexander Vorobiev; Alexey S. Kononikhin; Vsevolod Shurkhay; et al. (Data, 2021)

Comparison of different machine learning methods and dimensionality reduction for classification astrocytoma and glioblastoma tissues by mass spectra. - Evgeny S. Zhvansky; Anatoly A. Sorokin; Denis S. Zavorotnyuk; Vsevolod Shurkhay; Vasiliy A. Eliferov; Denis S. Bormotov; Daniil G. Ivanov; Alexander A. Potapov (F1000Research, 2021)

Aggregation of Multimodal ICE-MS Data into Joint Classifier Increases Quality of Brain Cancer Tissue Classification. - Anatoly A. Sorokin; Denis S. Bormotov; Denis S. Zavorotnyuk; Vasily A. Eliferov; Konstantin V. Bocharov; Stanislav I. Pekov; Evgeny N. Nikolaev; Igor A. Popov (Data, 2023)

Shapley Value as a Quality Control for Mass Spectra of Human Glioblastoma Tissues. - Denis S. Zavorotnyuk; Anatoly A. Sorokin; Stanislav I. Pekov; Denis S. Bormotov; Vasiliy A. Eliferov; Konstantin V. Bocharov; Eugene N. Nikolaev; Igor A. Popov (Data, 2023)