ProMSED: protein multiple sequence editor for Windows 3.11/95. - Anatoly S. Frolov; I. S. Pika; A. M. Eroshkin (Comput. Appl. Biosci., 1997)

GenExpress: A Computer System for Description, Analysis and Recognition of Regulatory Sequences in Eukaryotic Genome. - Nikolay A. Kolchanov; Mikhail P. Ponomarenko; Alexander E. Kel; Yury V. Kondrakhin; Anatoly S. Frolov; Fedor A. Kolpakov; T. N. Goryachkovskaya; O. V. Kel; Elena A. Ananko; Elena V. Ignatieva; Olga A. Podkolodnaya; Vladimir N. Babenko; et al. (ISMB, 1998)

Investigating extended regulatory regions of genomic DNA sequences. - Vladimir N. Babenko; P. S. Kosarev; Oleg V. Vishnevsky; Victor G. Levitsky; V. V. Basin; Anatoly S. Frolov (Bioinform., 1999)

Prediction of eukaryotic mRNA translational properties. - Alexey V. Kochetov; Mikhail P. Ponomarenko; Anatoly S. Frolov; L. L. Kisselev; Nikolay A. Kolchanov (Bioinform., 1999)

Integrated databases and computer systems for studying eukaryotic gene expression. - Nikolay A. Kolchanov; Mikhail P. Ponomarenko; Anatoly S. Frolov; Elena A. Ananko; Fedor A. Kolpakov; Elena V. Ignatieva; Olga A. Podkolodnaya; T. N. Goryachkovskaya; Irina L. Stepanenko; Tatyana I. Merkulova; V. V. Babenko; Y. V. Ponomarenko; et al. (Bioinform., 1999)

Nucleosomal DNA property database. - Victor G. Levitsky; Mikhail P. Ponomarenko; Julia V. Ponomarenko; Anatoly S. Frolov; Nikolay A. Kolchanov (Bioinform., 1999)

Identification of sequence-dependent DNA features correlating to activity of DNA sites interacting with proteins. - Mikhail P. Ponomarenko; Julia V. Ponomarenko; Anatoly S. Frolov; Nikolay L. Podkolodny; Ludmila K. Savinkova; Nikolay A. Kolchanov; G. Christian Overton (Bioinform., 1999)

Oligonucleotide frequency matrices addressed to recognizing functional DNA sites. - Mikhail P. Ponomarenko; Julia V. Ponomarenko; Anatoly S. Frolov; Olga A. Podkolodnaya; Denis G. Vorobiev; Nikolay A. Kolchanov; G. Christian Overton (Bioinform., 1999)

Conformational and physicochemical DNA features specific for transcription factor binding sites. - Julia V. Ponomarenko; Mikhail P. Ponomarenko; Anatoly S. Frolov; Denis G. Vorobiev; G. Christian Overton; Nikolay A. Kolchanov (Bioinform., 1999)

PROF_ PAT 1.3: Updated database of patterns used to detect local similarities. - Alexander G. Bachinsky; Anatoly S. Frolov; Andrey N. Naumochkin; Lily Ph. Nizolenko; Andrey A. Yarigin (Bioinform., 2000)

SELEX_DB: an activated database on selected randomized DNA/RNA sequences addressed to genomic sequence annotation. - Julia V. Ponomarenko; Galina Orlova; Mikhail P. Ponomarenko; Sergey V. Lavryushev; Anatoly S. Frolov; Svetlana V. Zybova; Nikolay A. Kolchanov (Nucleic Acids Res., 2000)

ACTIVITY: a database on DNA/RNA sites activity adapted to apply sequence-activity relationships from one system to another. - Julia V. Ponomarenko; Dagmara P. Furman; Anatoly S. Frolov; Nikolay L. Podkolodny; Galina Orlova; Mikhail P. Ponomarenko; Nikolay A. Kolchanov; Akinori Sarai (Nucleic Acids Res., 2001)

rSNP_Guide, a database system for analysis of transcription factor binding to target sequences: application to SNPs and site-directed mutations. - Julia V. Ponomarenko; Tatyana I. Merkulova; Gennady V. Vasiliev; Zoya B. Levashova; Galina Orlova; Sergey V. Lavryushev; Oleg N. Fokin; Mikhail P. Ponomarenko; Anatoly S. Frolov; Akinori Sarai (Nucleic Acids Res., 2001)

SELEX_DB: a database on in vitro selected oligomers adapted for recognizing natural sites and for analyzing both SNPs and site-directed mutagenesis data. - Julia V. Ponomarenko; Galina Orlova; Anatoly S. Frolov; Mikhail S. Gelfand; Mikhail P. Ponomarenko (Nucleic Acids Res., 2002)

rSNP_Guide, a database system for analysis of transcription factor binding to DNA with variations: application to genome annotation. - Julia V. Ponomarenko; Tatyana I. Merkulova; Galina Orlova; Oleg N. Fokin; Elena Gorshkova; Anatoly S. Frolov; Vadim P. Valuev; Mikhail P. Ponomarenko (Nucleic Acids Res., 2003)