Investigations of Escherichia coli Promoter Sequences with Artificial Neural Networks: New Signals Discovered Upstream of the Transcriptional Startpoint. - Anders Gorm Pedersen; Jacob Engelbrecht (ISMB, 1995)

Characterization of Prokaryotic and Eukaryotic Promoters Using Hidden Markov Models. - Anders Gorm Pedersen; Pierre Baldi; Søren Brunak; Yves Chauvin (ISMB, 1996)

Neural Network Prediction of Translation Initiation Sites in Eukaryotes: Perspectives for EST and Genome Analysis. - Anders Gorm Pedersen; Henrik Nielsen (ISMB, 1997)

Computational Applications of DNA Structural Scales. - Pierre Baldi; Søren Brunak; Yves Chauvin; Anders Gorm Pedersen (ISMB, 1998)

Structural basis for triplet repeat disorders: a computational analysis. - Pierre Baldi; Søren Brunak; Yves Chauvin; Anders Gorm Pedersen (Bioinform., 1999)

The Biology of Eukaryotic Promoter Prediction - A Review. - Anders Gorm Pedersen; Pierre Baldi; Yves Chauvin; Søren Brunak (Comput. Chem., 1999)

Flexibility of the genetic code with respect to DNA structure. - Pierre-François Baisnée; Pierre Baldi; Søren Brunak; Anders Gorm Pedersen (Bioinform., 2001)

RevTrans: multiple alignment of coding DNA from aligned amino acid sequences. - Rasmus Wernersson; Anders Gorm Pedersen (Nucleic Acids Res., 2003)

Finding coevolving amino acid residues using row and column weighting of mutual information and multi-dimensional amino acid representation. - Rodrigo Gouveia-Oliveira; Anders Gorm Pedersen (Algorithms Mol. Biol., 2007)

MaxAlign: maximizing usable data in an alignment. - Rodrigo Gouveia-Oliveira; Peter Wad Sackett; Anders Gorm Pedersen (BMC Bioinform., 2007)

InterMap3D: predicting and visualizing co-evolving protein residues. - Rodrigo Gouveia-Oliveira; Francisco S. Roque; Rasmus Wernersson; Thomas Sicheritz-Pontén; Peter Wad Sackett; Anne Mølgaard; Anders Gorm Pedersen (Bioinform., 2009)

Plasmodium falciparum Erythrocyte Membrane Protein 1 Diversity in Seven Genomes - Divide and Conquer. - Thomas S. Rask; Daniel A. Hansen; Thor G. Theander; Anders Gorm Pedersen; Thomas Lavstsen (PLoS Comput. Biol., 2010)

Using expected sequence features to improve basecalling accuracy of amplicon pyrosequencing data. - Thomas S. Rask; Bent Petersen; Donald S. Chen; Karen P. Day; Anders Gorm Pedersen (BMC Bioinform., 2016)

Strand Orientation Bias Detector to determine the probability of FFPE sequencing artifacts. - Miklos Diossy; Zsofia Sztupinszki; Marcin Krzystanek; Judit Börcsök; Aron C. Eklund; István Csabai; Anders Gorm Pedersen; Zoltan Szallasi (Briefings Bioinform., 2021)