Automated detection of pulmonary nodules from whole lung helical CT scans: performance comparison for isolated and attached nodules. - Andinet Enquobahrie; Anthony P. Reeves; David F. Yankelevitz; Claudia I. Henschke (Image Processing, 2004)

IGSTK: framework and example application using an open source toolkit for image-guided surgery applications. - Peng Cheng; Hui Zhang; Hee-su Kim; Kevin Gary; M. Brian Blake; David Gobbi; Stephen R. Aylward; Julien Jomier; Andinet Enquobahrie; Rick Avila; Luis Ibáñez; Kevin Cleary (Image-Guided Procedures, 2006)

Designing tracking software for image-guided surgery applications: IGSTK experience. - Andinet Enquobahrie; David Gobbi; Matthew W. Turek; Patrick Cheng; Ziv Yaniv; Frank Lindseth; Kevin Cleary (Int. J. Comput. Assist. Radiol. Surg., 2008)

An open-source framework for testing tracking devices using Lego Mindstorms. - Julien Jomier; Luis Ibáñez; Andinet Enquobahrie; Danielle F. Pace; Kevin Cleary (Image-Guided Procedures, 2009)

Reducing depth uncertainty in large surgical workspaces, with applications to veterinary medicine. - Michel A. Audette; Ahmad Kolahi; Andinet Enquobahrie; Claudio Gatti; Kevin Cleary (Image-Guided Procedures, 2010)

Sensors management in robotic neurosurgery: The ROBOCAST project. - Alberto Vaccarella; Mirko Daniele Comparetti; Andinet Enquobahrie; Giancarlo Ferrigno; Elena De Momi (EMBC, 2011)

Deformable image registration of sliding organs using anisotropic diffusive regularization. - Danielle F. Pace; Andinet Enquobahrie; Hua Yang; Stephen R. Aylward; Marc Niethammer (ISBI, 2011)

Agile methods for open source safety-critical software. - Kevin Gary; Andinet Enquobahrie; Luis Ibáñez; Patrick Cheng; Ziv Yaniv; Kevin Cleary; Shylaja Kokoori; Benjamin Muffih; John Heidenreich (Softw. Pract. Exp., 2011)

Integration of a Multigrid ODE solver into an open medical simulation framework. - Xunlei Wu; Jianhua Yao 001; Andinet Enquobahrie; Huai-Ping Lee; Michel A. Audette (EMBC, 2012)

Neurosurgery simulation using non-linear finite element modeling and haptic interaction. - Huai-Ping Lee; Michel A. Audette; Grand Roman Joldes; Andinet Enquobahrie (Image-Guided Procedures, 2012)

Application of unscented Kalman filter for robust pose estimation in image-guided surgery. - Alberto Vaccarella; Elena De Momi; Marta Valenti; Giancarlo Ferrigno; Andinet Enquobahrie (Image-Guided Procedures, 2012)

Patient-specific port placement for laparoscopic surgery using atlas-based registration. - Andinet Enquobahrie; Vikas Shivaprabhu; Stephen R. Aylward; Julien Finet; Kevin Cleary; Ron Alterovitz (Image-Guided Procedures, 2013)

Unscented Kalman Filter Based Sensor Fusion for Robust Optical and Electromagnetic Tracking in Surgical Navigation. - Alberto Vaccarella; Elena De Momi; Andinet Enquobahrie; Giancarlo Ferrigno (IEEE Trans. Instrum. Meas., 2013)

Bender: An Open Source Software for Efficient Model Posing and Morphing. - Julien Finet; Ricardo Ortiz; Johan Andruejol; Andinet Enquobahrie; Julien Jomier; Jason Payne; Stephen R. Aylward (ISBMS, 2014)

A user-friendly automated port placement planning system for laparoscopic robotic surgery. - Luis G. Torres; Hamidreza Azimian; Andinet Enquobahrie (Image-Guided Procedures, 2014)

An ITK implementation of a physics-based non-rigid registration method for brain deformation in image-guided neurosurgery. - Yixun Liu; Andriy Kot; Fotis Drakopoulos; Chengjun Yao; Andriy Fedorov; Andinet Enquobahrie; Olivier Clatz; Nikos P. Chrisochoides (Frontiers Neuroinformatics, 2014)

Ultrasound-Guided Navigation System for Orthognathic Surgery. - Beatriz Paniagua; Dzenan Zukic; Ricardo Ortiz; Stephen R. Aylward; Brent Golden; Tung Nguyen; Andinet Enquobahrie (AE-CAI, 2015)

Effects of visual latency on visual-haptic experience of stiffness. - Bing Wu 005; Sung Hun Sim; Andinet Enquobahrie; Ricardo Ortiz (QoMEX, 2015)

Interactive continuous collision detection for topology changing models using dynamic clustering. - Liang He 008; Ricardo Ortiz; Andinet Enquobahrie; Dinesh Manocha (I3D, 2015)

SlicerPET: A workflow based software module for PET/CT guided needle biopsy. - Dzenan Zukic; Julien Finet; Emmanuel Wilson; Filip Banovac; Giuseppe Esposito; Kevin Cleary; Andinet Enquobahrie (CoRR, 2015)

Personalized Optimal Planning for the Surgical Correction of Metopic Craniosynostosis. - Antonio R. Porras; Dzenan Zukic; Andinet Enquobahrie; Gary F. Rogers; Marius George Linguraru (CLIP@MICCAI, 2016)

A Unified Framework for Haptic Interaction in Multimodal Virtual Environments. - Venkata Sreekanth Arikatla; Ricardo Ortiz; Suvranu De; Andinet Enquobahrie (MMVR, 2016)

An Approach for Automated Scene Management in Real-Time Medical Simulation Framework. - Venkata Sreekanth Arikatla; Ricardo Ortiz; Tansel Halic; Sean Radigan; David Thompson; Suvranu De; Andinet Enquobahrie (MMVR, 2016)

The Virtual Pediatric Airways Workbench. - Cory W. Quammen; Russell M. Taylor II; Pavel Krajcevski; Sorin Mitran; Andinet Enquobahrie; Richard Superfine; Brad Davis; Stephanie Davis; Carlton J. Zdanski (MMVR, 2016)

Locally Affine Diffeomorphic Surface Registration for Planning of Metopic Craniosynostosis Surgery. - Antonio R. Porras; Beatriz Paniagua; Andinet Enquobahrie; Scott Ensel; Hina Shah; Robert T. Keating; Gary F. Rogers; Marius George Linguraru (MICCAI (2), 2017)

Intracranial Volume Quantification from 3D Photography. - Liyun Tu; Antonio R. Porras; Scott Ensel; Deki Tsering; Beatriz Paniagua; Andinet Enquobahrie; Albert Oh; Robert T. Keating; Gary F. Rogers; Marius George Linguraru (CARE/CLIP@MICCAI, 2017)

Physiology informed virtual surgical planning: a case study with a virtual airway surgical planner and BioGears. - Lucas Potter; Venkata Sreekanth Arikatla; Aaron Bray; Jeffrey B. Webb; Andinet Enquobahrie (Image-Guided Procedures, 2017)

Temporal bone dissection simulator for training pediatric otolaryngology surgeons. - Pooneh R. Tabrizi; Hongqiang Sang; Hadi F. Talari; Diego Preciado; Reza Monfaredi; Brian Reilly; Venkata Sreekanth Arikatla; Andinet Enquobahrie; Kevin Cleary (Image-Guided Procedures, 2017)

Image-based immersed boundary model of the aortic root. - Ali Hasan; Ebrahim M. Kolahdouz; Andinet Enquobahrie; Thomas G. Caranasos; John P. Vavalle; Boyce E. Griffith (CoRR, 2017)

Virtual interactive suturing for the Fundamentals of Laparoscopic Surgery (FLS). - Di Qi; Karthikeyan Panneerselvam; Woojin Ahn; Venkata Sreekanth Arikatla; Andinet Enquobahrie; Suvranu De (J. Biomed. Informatics, 2017)

An Interactive, Patient-Specific Virtual Surgical Planning System for Upper Airway Obstruction Treatments. - Rachel B. Clipp; Jared Vicory; Samantha Horvath; Sorin Mitran; Julia S. Kimbell; John S. Rhee; Andinet Enquobahrie (EMBC, 2018)

Radiation-free quantification of head malformations in craniosynostosis patients from 3D photography. - Liyun Tu; Antonio R. Porras; Albert Oh; Natasha Leporé; Manuel Mastromanolis; Deki Tsering; Beatriz Paniagua; Andinet Enquobahrie; Robert T. Keating; Gary F. Rogers; Marius George Linguraru (Computer-Aided Diagnosis, 2018)

High fidelity virtual reality orthognathic surgery simulator. - Venkata Sreekanth Arikatla; Mohit Tyagi; Andinet Enquobahrie; Tung Nguyen; George H. Blakey; Raymond White; Beatriz Paniagua (Image-Guided Procedures, 2018)

Osteotomy planner: an open-source tool for osteotomy simulation. - Samantha Horvath; Beatriz Paniagua; Johan Andruejol; Antonio R. Porras; Marius George Linguraru; Andinet Enquobahrie (Image-Guided Procedures, 2018)

Locally Affine Diffeomorphic Surface Registration and Its Application to Surgical Planning of Fronto-Orbital Advancement. - Antonio R. Porras; Beatriz Paniagua; Scott Ensel; Robert T. Keating; Gary F. Rogers; Andinet Enquobahrie; Marius George Linguraru (IEEE Trans. Medical Imaging, 2018)

XAI-CBIR: Explainable AI System for Content based Retrieval of Video Frames from Minimally Invasive Surgery Videos. - Deepak Roy Chittajallu; Bo Dong; Paul Tunison; Roddy Collins; Katerina O. Wells; James W. Fleshman; Ganesh Sankaranarayanan; Steven D. Schwaitzberg; Lora Cavuoto; Andinet Enquobahrie (ISBI, 2019)

Quantitative evaluation of local head malformations from 3 dimensional photography: application to craniosynostosis. - Liyun Tu; Antonio R. Porras; Albert Oh; Natasha Leporé; Graham C. Buck; Deki Tsering; Andinet Enquobahrie; Robert T. Keating; Gary F. Rogers; Marius George Linguraru (Computer-Aided Diagnosis, 2019)

Intramodality Domain Adaptation Using Self Ensembling and Adversarial Training. - Zahil Shanis; Samuel Gerber; Mingchen Gao; Andinet Enquobahrie (DART/MIL3ID@MICCAI, 2019)

Active Learning Technique for Multimodal Brain Tumor Segmentation Using Limited Labeled Images. - Dhruv Sharma; Zahil Shanis; Chandan K. Reddy; Samuel Gerber; Andinet Enquobahrie (DART/MIL3ID@MICCAI, 2019)

Content-based retrieval of video segments from minimally invasive surgery videos using deep convolutional video descriptors and iterative query refinement. - Deepak Roy Chittajallu; Arslan Basharat; Paul Tunison; Samantha Horvath; Katerina O. Wells; Steven G. Leeds; James W. Fleshman; Ganesh Sankaranarayanan; Andinet Enquobahrie (Image-Guided Procedures, 2019)

Towards an advanced virtual ultrasound-guided renal biopsy trainer. - Samantha Horvath; Venkata Sreekanth Arikatla; Kevin Cleary; Karun Sharma; Avi Rosenberg; Andinet Enquobahrie (Image-Guided Procedures, 2019)

PET/CT-guided biopsy with respiratory motion correction. - Ruoqiao Zhang; Dzenan Zukic; Darrin W. Byrd; Andinet Enquobahrie; Adam M. Alessio; Kevin Cleary; Filip Banovac; Paul E. Kinahan (Int. J. Comput. Assist. Radiol. Surg., 2019)

Inferring Continuous Treatment Doses from Historical Data via Model-Based Entropy-Regularized Reinforcement Learning. - Jianxun Wang 002; David L. Roberts 001; Andinet Enquobahrie (ACML, 2020)

Toward automatic atlas-based surgical planning for septoplasty. - Jared Vicory; Guilherme J. M. Garcia; John S. Rhee; Andinet Enquobahrie (Int. J. Comput. Assist. Radiol. Surg., 2022)

gLBM: A GPU enabled Lattice Boltzmann Method Library. - Aaron Bray; Rachel B. Clipp; M. Umar Qureshi; Sorin Mitran; Andinet Enquobahrie (J. Open Source Softw., 2022)

An Integrated Virtual Surgical Planning System for Nasal Airway Obstruction. - Jean-Christophe Fillion-Robin; Aaron Bray; Jared Vicory; Rachel B. Clipp; Guilherme J. M. Garcia; John S. Rhee; Andinet Enquobahrie (ISBI, 2023)

Harmonization Benchmarking Tool for Neuroimaging Datasets. - T. Osika; Ebrahim Ebrahim; Martin Styner; Marc Niethammer; T. Sawyer; Andinet Enquobahrie (ISBI, 2023)

Optimal transport features for morphometric population analysis. - Samuel Gerber; Marc Niethammer; Ebrahim Ebrahim; Joseph Piven; Stephen R. Dager; Martin Styner; Stephen R. Aylward; Andinet Enquobahrie (Medical Image Anal., 2023)

The interactive medical simulation toolkit (iMSTK): an open source platform for surgical simulation. - Jacob Moore; Harald Scheirich; Shreeraj Jadhav; Andinet Enquobahrie; Beatriz Paniagua; Andrew Wilson; Aaron Bray; Ganesh Sankaranarayanan; Rachel B. Clipp (Frontiers Virtual Real., 2023)

Focused active learning for histopathological image classification. - Arne Schmidt 005; Pablo Morales-Álvarez; Lee A. D. Cooper; Lee A. Newberg; Andinet Enquobahrie; Rafael Molina 001; Aggelos K. Katsaggelos (Medical Image Anal., 2024)