Uncovering impacts: a case study in using altmetrics tools. - Jason Priem; Cristhian Parra; Heather A. Piwowar; Paul Groth; Andra Waagmeester (SePublica@ESWC, 2012)

The Pharmacology Workspace: A Platform for Drug Discovery. - Alasdair J. G. Gray; Sune Askjaer; Christian Y. A. Brenninkmeijer; Kees Burger; Christine Chichester; James M. Eales; Chris T. A. Evelo; Carole A. Goble; Paul Groth; Lee Harland; Antonis Loizou; Steve Pettifer; et al. (ICBO, 2012)

SemScape: Visualizating Semantic Web Data Landscapes with Cytoscape 3.0. - Andrea Splendiani; Andra Waagmeester; Carina Haupt; Helena F. Deus (SWAT4LS, 2012)

The ChEMBL database as linked open data. - Egon L. Willighagen; Andra Waagmeester; Ola Spjuth; Peter Ansell; Antony J. Williams; Valery Tkachenko; Janna Hastings; Bin Chen 002; David J. Wild 001 (J. Cheminformatics, 2013)

Scientific Lenses to Support Multiple Views over Linked Chemistry Data. - Colin R. Batchelor; Christian Y. A. Brenninkmeijer; Christine Chichester; Mark Davies; Daniela Digles; Ian Dunlop; Chris T. A. Evelo; Anna Gaulton; Carole A. Goble; Alasdair J. G. Gray; Paul Groth; Lee Harland; et al. (ISWC (1), 2014)

Bring Your Own Data Workshops: A Mechanism to Aid Data Owners to Comply with Linked Data Best Practices. - Marco Roos; Alasdair J. G. Gray; Andra Waagmeester; Mark Thompson 002; Rajaram Kaliyaperumal; Eelke van der Horst; Barend Mons; Mark D. Wilkinson (SWAT4LS, 2014)

Applying linked data approaches to pharmacology: Architectural decisions and implementation. - Alasdair J. G. Gray; Paul Groth; Antonis Loizou; Sune Askjaer; Christian Y. A. Brenninkmeijer; Kees Burger; Christine Chichester; Chris T. A. Evelo; Carole A. Goble; Lee Harland; Steve Pettifer; Mark Thompson 002; et al. (Semantic Web, 2014)

Wikidata: A Platform for Data Integration and Dissemination for the Life Sciences and Beyond. - Elvira Mitraka; Andra Waagmeester; Sebastian Burgstaller-Muehlbacher; Lynn M. Schriml; Andrew I. Su; Benjamin M. Good (SWAT4LS, 2015)

Opportunities and Challenges Presented by Wikidata in the Context of Biocuration. - Benjamin M. Good; Sebastian Burgstaller-Muehlbacher; Elvira Mitraka; Timothy Putman; Andrew I. Su; Andra Waagmeester (ICBO/BioCreative, 2016)

Linking Wikidata to the Rest of the Semantic Web. - Andra Waagmeester; Egon L. Willighagen; Núria Queralt Rosinach; Elvira Mitraka; Sebastian Burgstaller-Muehlbacher; Tim E. Putman; Julia Turner; Lynn M. Schriml; Paul Pavlidis; Andrew I. Su; Benjamin M. Good (SWAT4LS, 2016)

Wikidata as a semantic framework for the Gene Wiki initiative. - Sebastian Burgstaller-Muehlbacher; Andra Waagmeester; Elvira Mitraka; Julia Turner; Tim E. Putman; Justin Leong; Chinmay Naik; Paul Pavlidis; Lynn M. Schriml; Benjamin M. Good; Andrew I. Su (Database J. Biol. Databases Curation, 2016)

Centralizing content and distributing labor: a community model for curating the very long tail of microbial genomes. - Tim E. Putman; Sebastian Burgstaller-Muehlbacher; Andra Waagmeester; Chunlei Wu; Andrew I. Su; Benjamin M. Good (Database J. Biol. Databases Curation, 2016)

WikiPathways: capturing the full diversity of pathway knowledge. - Martina Kutmon; Anders Riutta; Nuno Nunes 002; Kristina Hanspers; Egon L. Willighagen; Anwesha Bohler; Jonathan Mélius; Andra Waagmeester; Sravanthi R. Sinha; Ryan A. Miller; Susan L. Coort; Elisa Cirillo; et al. (Nucleic Acids Res., 2016)

Using the Semantic Web for Rapid Integration of WikiPathways with Other Biological Online Data Resources. - Andra Waagmeester; Martina Kutmon; Anders Riutta; Ryan A. Miller; Egon L. Willighagen; Chris T. A. Evelo; Alexander R. Pico (PLoS Comput. Biol., 2016)

The FAIRification of Data and the Potential of FAIR Resources Demonstrated, in Practice, at the Rome Bring Your Own Data Workshop. - Claudio Carta; Marco Roos; Annika Jacobsen; Rajaram Kaliyaperumal; Mark Thompson 002; Mark D. Wilkinson; Ronald Cornet; Andra Waagmeester; David van Enckevort; Mascha Jansen; Luana Licata; Allegra Via; et al. (SWAT4LS, 2017)

WikiGenomes: an open web application for community consumption and curation of gene annotation data in Wikidata. - Tim E. Putman; Sebastien Lelong; Sebastian Burgstaller-Muehlbacher; Andra Waagmeester; Colin M. Diesh; Nathan A. Dunn; Monica C. Munoz-Torres; Gregory S. Stupp; Chunlei Wu; Andrew I. Su; Benjamin M. Good (Database J. Biol. Databases Curation, 2017)

Wikidata as an intuitive resource towards semantic data modeling in data FAIRification. - Annika Jacobsen; Andra Waagmeester; Rajaram Kaliyaperumal; Gregory S. Stupp; Lynn M. Schriml; Mark Thompson 002; Andrew I. Su; Marco Roos (SWAT4LS, 2018)

WikiPathways: a multifaceted pathway database bridging metabolomics to other omics research. - Denise N. Slenter; Martina Kutmon; Kristina Hanspers; Anders Riutta; Jacob Windsor; Nuno Nunes 002; Jonathan Mélius; Elisa Cirillo; Susan L. Coort; Daniela Digles; Friederike Ehrhart; Pieter Giesbertz; et al. (Nucleic Acids Res., 2018)

Using Shape Expressions (ShEx) to Share RDF Data Models and to Guide Curation with Rigorous Validation. - Katherine Thornton; Harold Solbrig; Gregory S. Stupp; José Emilio Labra Gayo; Daniel Mietchen; Eric Prud'hommeaux; Andra Waagmeester (ESWC, 2019)

ChlamBase: a curated model organism database for the Chlamydia research community. - Tim E. Putman; Kevin Hybiske; Derek Jow; Cyrus Afrasiabi; Sebastien Lelong; Marco Alvarado Cano; Gregory S. Stupp; Andra Waagmeester; Benjamin M. Good; Chunlei Wu; Andrew I. Su (Database J. Biol. Databases Curation, 2019)

FAIR Principles: Interpretations and Implementation Considerations. - Annika Jacobsen; Ricardo de Miranda Azevedo; Nick S. Juty; Dominique Batista; Simon J. Coles; Ronald Cornet; Mélanie Courtot; Mercè Crosas; Michel Dumontier; Chris T. A. Evelo; Carole A. Goble; Giancarlo Guizzardi; et al. (Data Intell., 2020)

WikiPathways: connecting communities. - Marvin Martens; Ammar Ammar; Anders Riutta; Andra Waagmeester; Denise N. Slenter; Kristina Hanspers; Ryan A. Miller; Daniela Digles; Elisson N. Lopes; Friederike Ehrhart; Lauren J. Dupuis; Laurent A. Winckers; et al. (Nucleic Acids Res., 2021)

Ten simple rules for creating reusable pathway models for computational analysis and visualization. - Kristina Hanspers; Martina Kutmon; Susan L. Coort; Daniela Digles; Lauren J. Dupuis; Friederike Ehrhart; Finterly Hu; Elisson N. Lopes; Marvin Martens; Nhung Pham; Woosub Shin; Denise N. Slenter; et al. (PLoS Comput. Biol., 2021)

Complex Portal 2022: new curation frontiers. - Birgit H. M. Meldal; Livia Perfetto; Colin W. Combe; Tiago Lubiana; João Vitor Ferreira Cavalcante; Hema Bye-A-Jee; Andra Waagmeester; Noemi del-Toro; Anjali Shrivastava; Elisabet Barrera; Edith D. Wong; Bernhard Mlecnik; et al. (Nucleic Acids Res., 2022)

Ten quick tips for editing Wikidata. - Thomas Shafee; Daniel Mietchen; Tiago Lubiana; Dariusz Jemielniak; Andra Waagmeester (PLoS Comput. Biol., 2023)

Extracting shapes from large RDF data collections. - Daniel Fernández-Álvarez; Yasunori Yamamoto; José Emilio Labra Gayo; Andra Waagmeester (SWAT4HCLS, 2024)

There and back again: RDF as a bridge to domain-platforms like OMERO. - Josh Moore; Andra Waagmeester; Kristina M. Hettne; Katherine Wolstencroft; Susanne Kunis (SWAT4HCLS, 2024)

Building Expertise on FAIR Through Evolving Bring Your Own Data (BYOD) Workshops: Describing the Data, Software, and Management-focused Approaches and Their Evolution. - César Henrique Bernabé; Lieze Thielemans; Rajaram Kaliyaperumal; Claudio Carta; Shuxin Zhang; Celia W. G. van Gelder; Nirupama Benis; Luiz Olavo Bonino da Silva Santos; Ronald Cornet; Bruna dos Santos Vieira; Nawel Lalout; Inês Henriques; et al. (Data Intell., 2024)

Shape Expressions with Inheritance. - Iovka Boneva; José Emilio Labra Gayo; Eric Prud'hommeaux; Katherine Thornton; Andra Waagmeester (ESWC (1), 2025)