Unified Modeling of Several Perturbation Experiments in Systems Biology - A Case Study on the Glucose Uptake of Lactococcus Lactis. - András Hartmann; Susana Vinga; João Miranda Lemos (BIOINFORMATICS, 2011)

Identification of Hiv-1 Dynamics - Estimating the Noise Model, Constant and Time-varying Parameters of Long-term Clinical Data. - András Hartmann; Susana Vinga; João Miranda Lemos (BIOINFORMATICS, 2012)

Hybrid identification of time-varying parameter with particle filtering and expectation maximization. - András Hartmann; Susana Vinga; João Miranda Lemos (MED, 2013)

Exploring the Cellular Objective in Flux Balance Constraint-Based Models. - Rafael S. Costa; Son Nguyen; András Hartmann; Susana Vinga (CMSB, 2014)

Identifying IIR filter coefficients using particle swarm optimization with application to reconstruction of missing cardiovascular signals. - András Hartmann; João Miranda Lemos; Rafael S. Costa; Susana Vinga (Eng. Appl. Artif. Intell., 2014)

Modeling multiple experiments using regularized optimization: A case study on bacterial glucose utilization dynamics. - András Hartmann; João Miranda Lemos; Susana Vinga (Comput. Biol. Medicine, 2015)

RefBool: a reference-based algorithm for discretizing gene expression data. - Sascha Jung; András Hartmann; Antonio del Sol (Bioinform., 2017)

SigHotSpotter: scRNA-seq-based computational tool to control cell subpopulation phenotypes for cellular rejuvenation strategies. - Srikanth Ravichandran; András Hartmann; Antonio del Sol (Bioinform., 2020)