FIGENIX: Intelligent automation of genomic annotation: expertise integration in a new software platform. - Philippe Gouret; Vérane Vitiello; Nathalie Balandraud; André Gilles; Pierre Pontarotti; Etienne G. J. Danchin (BMC Bioinform., 2005)

QDD: a user-friendly program to select microsatellite markers and design primers from large sequencing projects. - Emese Meglécz; Caroline Costedoat; Vincent Dubut; André Gilles; Thibaut Malausa; Nicolas Pech; Jean-François Martin (Bioinform., 2010)

SESAME (SEquence Sorter & AMplicon Explorer): genotyping based on high-throughput multiplex amplicon sequencing. - Emese Meglécz; Sylvain Piry; Erick Desmarais; Maxime Galan; André Gilles; Emmanuel Guivier; Nicolas Pech; Jean-François Martin (Bioinform., 2011)