Parallelized phylogenetic post-analysis on multi-core architectures. - Andre J. Aberer; Nicholas D. Pattengale; Alexandros Stamatakis (J. Comput. Sci., 2010)

Parallel computation of phylogenetic consensus trees. - Andre J. Aberer; Nicholas D. Pattengale; Alexandros Stamatakis (ICCS, 2010)

A Simple and Accurate Method for Rogue Taxon Identification. - Andre J. Aberer; Alexandros Stamatakis (BIBM, 2011)

Uncovering Hidden Phylogenetic Consensus in Large Data Sets. - Nicholas D. Pattengale; Andre J. Aberer; Krister M. Swenson; Alexandros Stamatakis; Bernard M. E. Moret (IEEE ACM Trans. Comput. Biol. Bioinform., 2011)

RAxML-Light: a tool for computing terabyte phylogenies. - Alexandros Stamatakis; Andre J. Aberer; Christian Goll; Stephen A. Smith; Simon A. Berger; Fernando Izquierdo-Carrasco (Bioinform., 2012)

Boosting the Performance of Bayesian Divergence Time Estimation with the Phylogenetic Likelihood Library. - Diego Darriba; Andre J. Aberer; Tomás Flouri; Tracy A. Heath; Fernando Izquierdo-Carrasco; Alexandros Stamatakis (IPDPS Workshops, 2013)

Novel Parallelization Schemes for Large-Scale Likelihood-based Phylogenetic Inference. - Alexandros Stamatakis; Andre J. Aberer (IPDPS, 2013)

Rapid forward-in-time simulation at the chromosome and genome level. - Andre J. Aberer; Alexandros Stamatakis (BMC Bioinform., 2013)

The Divisible Load Balance Problem and Its Application to Phylogenetic Inference. - Kassian Kobert; Tomás Flouri; Andre J. Aberer; Alexandros Stamatakis (WABI, 2014)

ExaML version 3: a tool for phylogenomic analyses on supercomputers. - Alexey M. Kozlov; Andre J. Aberer; Alexandros Stamatakis (Bioinform., 2015)

Algorithmic Advancements and Massive Parallelism for Large-Scale Datasets in Phylogenetic Bayesian Markov Chain Monte Carlo. - Andre J. Aberer (2015)