Byte Structure Variable Length Coding (BS-VLC): A New Specific Algorithm Applied in the Compression of Trajectories Generated by Molecular Dynamics. - André Melo; André T. Puga; Fernanda Gentil; Nelson Brito; Artur Pimenta Alves; Maria João Ramos (J. Chem. Inf. Comput. Sci., 2000)

The search for a new model structure of beta-Factor XIIa. - Elsa S. Henriques; Wely B. Floriano; Nathalie Reuter; André Melo; David Brown 001; José A. N. F. Gomes; Bernard Maigret; Marco A. C. Nascimento; Maria João Ramos (J. Comput. Aided Mol. Des., 2001)

Inductive Lexical Learning of Class Expressions. - Lorenz Bühmann; Daniel Fleischhacker; Jens Lehmann 001; André Melo; Johanna Völker (EKAW, 2014)

Correlation-Based Refinement of Rules with Numerical Attributes. - André Melo; Martin Theobald; Johanna Völker (FLAIRS, 2014)

Dynamic Structure of NGF and proNGF Complexed with p75NTR: Pro-Peptide Effect. - António César Pimenta; Daniel F. A. R. Dourado; João M. Martins; André Melo; M. N. Dias Soeiro Cordeiro; Ramiro D. Almeida; Giulia Morra; Irina S. Moreira (J. Chem. Inf. Model., 2014)

Solvent Accessible Surface Area-Based Hot-Spot Detection Methods for Protein-Protein and Protein-Nucleic Acid Interfaces. - Cristian R. Munteanu; António César Pimenta; Carlos Fernandez-Lozano; André Melo; M. N. D. S. Cordeiro; Irina S. Moreira (J. Chem. Inf. Model., 2015)

Type Prediction in RDF Knowledge Bases Using Hierarchical Multilabel Classification. - André Melo; Heiko Paulheim; Johanna Völker (WIMS, 2016)

Synthesizing Knowledge Graphs for Link and Type Prediction Benchmarking. - André Melo; Heiko Paulheim (ESWC (1), 2017)

Detection of Relation Assertion Errors in Knowledge Graphs. - André Melo; Heiko Paulheim (K-CAP, 2017)

An Approach to Correction of Erroneous Links in Knowledge Graphs. - André Melo; Heiko Paulheim (K-CAP Workshops, 2017)

Type Prediction in Noisy RDF Knowledge Bases Using Hierarchical Multilabel Classification with Graph and Latent Features. - André Melo; Johanna Völker; Heiko Paulheim (Int. J. Artif. Intell. Tools, 2017)

Automatic refinement of large-scale cross-domain knowledge graphs. - André Melo (2018)

Local and global feature selection for multilabel classification with binary relevance - An empirical comparison on flat and hierarchical problems. - André Melo; Heiko Paulheim (Artif. Intell. Rev., 2019)

A System for Medical Information Extraction and Verification from Unstructured Text. - Damir Juric; Giorgos Stoilos; André Melo; Jonathan Moore; Mohammad Khodadadi (AAAI, 2020)

Understanding the Binding Specificity of G-Protein Coupled Receptors toward G-Proteins and Arrestins: Application to the Dopamine Receptor Family. - António J. Preto; Carlos A. V. Barreto; Salete J. Baptista; José G. de Almeida; Agostinho Lemos; André Melo; M. Natália Dias Soeiro Cordeiro; Zeynep Kurkcuoglu; Rita Melo; Irina S. Moreira (J. Chem. Inf. Model., 2020)

Automatic detection of relation assertion errors and induction of relation constraints. - André Melo; Heiko Paulheim (Semantic Web, 2020)

Quantum Link Prediction in Complex Networks. - João P. Moutinho; André Melo; Bruno C. Coutinho; István A. Kovács; Yasser Omar (CoRR, 2021)

A System for Aligning Geographical Entities from Large Heterogeneous Sources. - André Melo; Btissam Er-Rahmadi; Jeff Z. Pan (ISPRS Int. J. Geo Inf., 2022)

Pulse-efficient quantum machine learning. - André Melo; Nathan Earnest-Noble; Francesco Tacchino (Quantum, 2023)

A Large-scale Offer Alignment Model for Partitioning Filtering and Matching Product Offers. - Wenyu Huang; André Melo; Jeff Z. Pan (SIGIR, 2024)

GeAR: Graph-enhanced Agent for Retrieval-augmented Generation. - Zhili Shen; Chenxin Diao; Pavlos Vougiouklis; Pascual Merita; Shriram Piramanayagam; Enting Chen; Damien Graux; André Melo; Ruofei Lai; Zeren Jiang; Zhongyang Li; Ye Qi; et al. (ACL (Findings), 2025)