Gene Unscrambler for detangling scrambled genes in ciliates. - Andre R. O. Cavalcanti; Laura F. Landweber (Bioinform., 2004)

MDS_IES_DB: a database of macronuclear and micronuclear genes in spirotrichous ciliates. - Andre R. O. Cavalcanti; Thomas H. Clarke; Laura F. Landweber (Nucleic Acids Res., 2005)

Insights into a Biological Computer: Detangling Scrambled Genes in Ciliates. - Andre R. O. Cavalcanti; Laura F. Landweber (Nanotechnology: Science and Computation, 2006)

Detection of Fused Genes in Eukaryotic Genomes using Gene deFuser: Analysis of the Tetrahymena thermophila genome. - Hannah M. W. Salim; Amanda M. Koire; Nicholas A. Stover; Andre R. O. Cavalcanti (BMC Bioinform., 2011)