Heuristics for the Gene-Duplication Problem: A Theta ( n ) Speed-Up for the Local Search. - Mukul S. Bansal; J. Gordon Burleigh; Oliver Eulenstein; André Wehe (RECOMB, 2007)

Locating Multiple Gene Duplications through Reconciled Trees. - J. Gordon Burleigh; Mukul S. Bansal; André Wehe; Oliver Eulenstein (RECOMB, 2008)

DupTree: a program for large-scale phylogenetic analyses using gene tree parsimony. - André Wehe; Mukul S. Bansal; J. Gordon Burleigh; Oliver Eulenstein (Bioinform., 2008)

The Importance of Run-Time Error Detection. - Glenn R. Luecke; James Coyle; James Hoekstra; Marina Kraeva; Ying Xu; Mi-Young Park; Elizabeth Kleiman; Olga Weiss; André Wehe; Melissa Yahya (Parallel Tools Workshop, 2009)

Locating Large-Scale Gene Duplication Events through Reconciled Trees: Implications for Identifying Ancient Polyploidy Events in Plants. - John Gordon Burleigh; Mukul S. Bansal; André Wehe; Oliver Eulenstein (J. Comput. Biol., 2009)

The Gene-Duplication Problem: Near-Linear Time Algorithms for NNI-Based Local Searches. - Mukul S. Bansal; Oliver Eulenstein; André Wehe (IEEE ACM Trans. Comput. Biol. Bioinform., 2009)

Scaling the Gene Duplication Problem Towards the Tree of Life. - André Wehe; John Gordon Burleigh (BICoB, 2010)

iGTP: A software package for large-scale gene tree parsimony analysis. - Ruchi Chaudhary; Mukul S. Bansal; André Wehe; David Fernández-Baca; Oliver Eulenstein (BMC Bioinform., 2010)

A scalable parallelization of the gene duplication problem. - André Wehe; Wen-Chieh Chang 002; Oliver Eulenstein; Srinivas Aluru (J. Parallel Distributed Comput., 2010)

Algorithms for Knowledge-Enhanced Supertrees. - André Wehe; J. Gordon Burleigh; Oliver Eulenstein (ISBRA, 2012)

Efficient Algorithms for Knowledge-Enhanced Supertree and Supermatrix Phylogenetic Problems. - André Wehe; J. Gordon Burleigh; Oliver Eulenstein (IEEE ACM Trans. Comput. Biol. Bioinform., 2013)