A-clustering: a novel method for the detection of co-regulated methylation regions, and regions associated with exposure. - Tamar Sofer; Elizabeth D. Schifano; Jane A. Hoppin; Lifang Hou; Andrea A. Baccarelli (Bioinform., 2013)

PGS: a tool for association study of high-dimensional microRNA expression data with repeated measures. - Yinan Zheng; Zhe Fei; Wei Zhang 253; Justin B. Starren; Lei Liu 004; Andrea A. Baccarelli; Yi Li; Lifang Hou (Bioinform., 2014)

CpGFilter: model-based CpG probe filtering with replicates for epigenome-wide association studies. - Jun Chen; Allan C. Just; Joel Schwartz; Lifang Hou; Nadereh Jafari; Zhifu Sun; Jean-Pierre A. Kocher; Andrea A. Baccarelli; Xihong Lin (Bioinform., 2016)

Estimating and testing high-dimensional mediation effects in epigenetic studies. - Haixiang Zhang; Yinan Zheng; Zhou Zhang 002; Tao Gao; Brian Joyce; Grace Yoon; Wei Zhang 253; Joel Schwartz; Allan C. Just; Elena Colicino; Pantel Vokonas; Lihui Zhao; et al. (Bioinform., 2016)

Ultra-high dimensional variable selection with application to normative aging study: DNA methylation and metabolic syndrome. - Grace Yoon; Yinan Zheng; Zhou Zhang 002; Haixiang Zhang; Tao Gao; Brian Joyce; Wei Zhang 253; Weihua Guan; Andrea A. Baccarelli; Wenxin Jiang 003; Joel Schwartz; Pantel Vokonas; et al. (BMC Bioinform., 2017)

Testing cell-type-specific mediation effects in genome-wide epigenetic studies. - Xiangyu Luo; Joel Schwartz; Andrea A. Baccarelli; Zhonghua Liu (Briefings Bioinform., 2021)

Aclust2.0: a revamped unsupervised R tool for Infinium methylation beadchips data analyses. - Oladele A. Oluwayiose; Haotian Wu; Feng Gao; Andrea A. Baccarelli; Tamar Sofer; J. Richard Pilsner (Bioinform., 2022)

AESurv: autoencoder survival analysis for accurate early prediction of coronary heart disease. - Yike Shen; Arce Domingo-Relloso; Allison Kupsco; Marianthi-Anna Kioumourtzoglou; Maria Tellez-Plaza; Jason G. Umans; Amanda M. Fretts; Ying Zhang; Peter F. Schnatz; Ramon Casanova; Lisa Warsinger Martin; Steve Horvath; et al. (Briefings Bioinform., 2024)