A comparison of techniques for calculating protein essential dynamics. - Daan M. F. van Aalten; Bert L. de Groot; John B. C. Findlay; Herman J. C. Berendsen; Andrea Amadei (J. Comput. Chem., 1997)

Conformational fluctuations and electronic properties in myoglobin. - Massimiliano Aschi; Costantino Zazza; Riccardo Spezia; Cecilia Bossa; Alfredo Di Nola; Maurizio Paci; Andrea Amadei (J. Comput. Chem., 2004)

Essential dynamics for the study of microstructures in liquids. - Maira D'Alessando; Andrea Amadei; Mauro Stener; Massimiliano Aschi (J. Comput. Chem., 2015)

Tyrosine absorption spectroscopy: Backbone protonation effects on the side chain electronic properties. - Sara Del Galdo; Giordano Mancini; Isabella Daidone; Laura Zanetti Polzi; Andrea Amadei; Vincenzo Barone (J. Comput. Chem., 2018)