A Memetic Algorithm for Protein Structure Prediction in a 3D-Lattice HP Model. - Andrea Bazzoli; Andrea Tettamanzi (EvoWorkshops, 2004)

Ab initio protein structure prediction with a dipeptide-assembly evolutionary algorithm. - Andrea Bazzoli; Giorgio Colombo 001; Andrea Tettamanzi (GECCO, 2007)

Evidence against the Paradigm of Energy Minimization in Protein Design. - Andrea Bazzoli; Andrea Tettamanzi (BIOCOMP, 2009)

"Solvent hydrogen-bond occlusion": A new model of polar desolvation for biomolecular energetics. - Andrea Bazzoli; John Karanicolas (J. Comput. Chem., 2017)

Accelerated Molecular Dynamics for Peptide Folding: Benchmarking Different Combinations of Force Fields and Explicit Solvent Models. - Crescenzo Coppa; Andrea Bazzoli; Maral Barkhordari; Alessandro Contini (J. Chem. Inf. Model., 2023)