Information Extraction from Microarray Data: A Survey of Data Mining Techniques. - Alessandro Fiori; Alberto Grand; Giulia Bruno; Francesco Gavino Brundu; Domenico Schioppa; Andrea Bertotti (J. Database Manag., 2014)

One tool to find them all: a case of data integration and querying in a distributed LIMS platform. - Alberto Grand; Emanuele Geda; Andrea Mignone; Andrea Bertotti; Alessandro Fiori (Database J. Biol. Databases Curation, 2019)

Semalytics: a semantic analytics platform for the exploration of distributed and heterogeneous cancer data in translational research. - Andrea Mignone; Alberto Grand; Alessandro Fiori; Enzo Medico; Andrea Bertotti (Database J. Biol. Databases Curation, 2019)

Unsupervised Gene Identification in Colorectal Cancer. - Pietro Barbiero; Andrea Bertotti; Gabriele Ciravegna; Giansalvo Cirrincione; Eros Pasero; Elio Piccolo (Quantifying and Processing Biomedical and Behavioral Signals, 2019)

Supervised Gene Identification in Colorectal Cancer. - Pietro Barbiero; Andrea Bertotti; Gabriele Ciravegna; Giansalvo Cirrincione; Eros Pasero; Elio Piccolo (Quantifying and Processing Biomedical and Behavioral Signals, 2019)

Effective Evaluation of Clustering Algorithms on Single-Cell CNA data. - Marilisa Montemurro; Gianvito Urgese; Elena Grassi; Carmelo Gabriele Pizzino; Andrea Bertotti; Elisa Ficarra (ICBBE, 2020)

DNA Microarray Classification: Evolutionary Optimization of Neural Network Hyper-parameters. - Pietro Barbiero; Andrea Bertotti; Gabriele Ciravegna; Giansalvo Cirrincione; Elio Piccolo (Neural Approaches to Dynamics of Signal Exchanges, 2020)

Understanding Cancer Phenomenon at Gene Expression Level by using a Shallow Neural Network Chain. - Pietro Barbiero; Andrea Bertotti; Gabriele Ciravegna; Giansalvo Cirrincione; Elio Piccolo; Alberto Tonda (Neural Approaches to Dynamics of Signal Exchanges, 2020)

PhyliCS: a Python library to explore scCNA data and quantify spatial tumor heterogeneity. - Marilisa Montemurro; Elena Grassi; Carmelo Gabriele Pizzino; Andrea Bertotti; Elisa Ficarra; Gianvito Urgese (BMC Bioinform., 2021)

CONNECTOR, fitting and clustering of longitudinal data to reveal a new risk stratification system. - Simone Pernice; Roberta Sirovich; Elena Grassi; Marco Viviani 002; Martina Ferri; Francesco Sassi; Luca Alessandrì; Dora Tortarolo; Raffaele A. Calogero; Livio Trusolino; Andrea Bertotti; Marco Beccuti; et al. (Bioinform., 2023)

EGAsubmitter: A software to automate submission of nucleic acid sequencing data to the European Genome-phenome Archive. - Marco Viviani 002; Marilisa Montemurro; Livio Trusolino; Andrea Bertotti; Gianvito Urgese; Elena Grassi (Frontiers Bioinform., 2023)

An Ensemble Method for Calling and Ranking Somatic Structural Variants Using Long and Short Reads. - Walter Gallego Gomez; Elena Grassi; Andrea Bertotti; Gianvito Urgese (ICBRA, 2024)

GenomeCruzer, a 3D Interactive Environment for Genomic Data Visualization and Analysis. - Cassisa Anna; Jamal Elhasnaoui; Uliveto Chiara; Riccardo Corsi; Elena Grassi; Dalibor Stuchlík; Livio Trusolino; Ales Krenek; Luca Vezzadini; Andrea Bertotti; Claudio Isella; Enzo Medico (BIOSTEC (1), 2025)