DIG - a system for gene annotation and functional discovery. - Mark DeLong; Guang Yao; Quanli Wang; Adrian Dobra; Esther P. Black; Jeffrey T. Chang; Andrea Bild; Mike West; Joseph Nevins; Holly Dressman (Bioinform., 2005)

Analysis of sample set enrichment scores: assaying the enrichment of sets of genes for individual samples in genome-wide expression profiles. - Elena J. Edelman; Alessandro Porrello; Justin Guinney; Bala Balakumaran; Andrea Bild; Phillip G. Febbo; Sayan Mukherjee 001 (ISMB (Supplement of Bioinformatics), 2006)

Alternative preprocessing of RNA-Sequencing data in The Cancer Genome Atlas leads to improved analysis results. - Mumtahena Rahman; Laurie K. Jackson; W. Evan Johnson; Dean Y. Li; Andrea H. Bild; Stephen R. Piccolo (Bioinform., 2015)

ASSIGN: context-specific genomic profiling of multiple heterogeneous biological pathways. - Ying Shen; Mumtahena Rahman; Stephen R. Piccolo; Daniel Gusenleitner; Nader N. El-Chaar; Luis Cheng; Stefano Monti; Andrea H. Bild; W. Evan Johnson (Bioinform., 2015)

Knowledge-based classification of fine-grained immune cell types in single-cell RNA-Seq data. - Xuan Liu; Sara J. C. Gosline; Lance T. Pflieger; Pierre Wallet; Archana Iyer; Justin Guinney; Andrea H. Bild; Jeffrey T. Chang (Briefings Bioinform., 2021)