Ontological Enrichment of the Genes-to-Systems Breast Cancer Database. - Federica Viti; Ettore Mosca; Ivan Merelli; Andrea Calabria; Roberta Alfieri; Luciano Milanesi (MTSR, 2009)

A multilevel data integration resource for breast cancer study. - Ettore Mosca; Roberta Alfieri; Ivan Merelli; Federica Viti; Andrea Calabria; Luciano Milanesi (BMC Syst. Biol., 2010)

Grid Based Genome Wide Studies on Atrial Flutter. - Andrea Calabria; Davide Di Pasquale; Matteo Gnocchi; Paolo Alessandro Cozzi; Alessandro Orro; Gabriele Antonio Trombetti; Luciano Milanesi (J. Grid Comput., 2010)

SNPRanker: a tool for identification and scoring of SNPs associated to target genes. - Andrea Calabria; Ettore Mosca; Federica Viti; Ivan Merelli; Luciano Milanesi (J. Integr. Bioinform., 2010)

Ontology-based resources for bioinformatics analysis. - Federica Viti; Ivan Merelli; Andrea Calabria; Paolo Cozzi; Ettore Mosca; Roberta Alfieri; Luciano Milanesi (Int. J. Metadata Semant. Ontologies, 2011)

SNPranker 2.0: a gene-centric data mining tool for diseases associated SNP prioritization in GWAS. - Ivan Merelli; Andrea Calabria; Paolo Cozzi; Federica Viti; Ettore Mosca; Luciano Milanesi (BMC Bioinform., 2013)

adLIMS: a customized open source software that allows bridging clinical and basic molecular research studies. - Andrea Calabria; Giulio Spinozzi; Fabrizio Benedicenti; Erika Tenderini; Eugenio Montini (BMC Bioinform., 2015)

VISPA2: a scalable pipeline for high-throughput identification and annotation of vector integration sites. - Giulio Spinozzi; Andrea Calabria; Stefano Brasca; Stefano Beretta 001; Ivan Merelli; Luciano Milanesi; Eugenio Montini (BMC Bioinform., 2017)

γ-TRIS: a graph-algorithm for comprehensive identification of vector genomic insertion sites. - Andrea Calabria; Stefano Beretta 001; Ivan Merelli; Giulio Spinozzi; Stefano Brasca; Yuri Pirola; Fabrizio Benedicenti; Erika Tenderini; Paola Bonizzoni; Luciano Milanesi; Eugenio Montini (Bioinform., 2020)

InCliniGene enables high-throughput and comprehensive in vivo clonal tracking toward clinical genomics data integration. - Ivan Merelli; Stefano Beretta 001; Daniela Cesana; Alessandro Gennari; Fabrizio Benedicenti; Giulio Spinozzi; Daniele Cesini; Eugenio Montini; Daniele D'Agostino; Andrea Calabria (Database J. Biol. Databases Curation, 2023)

ISAnalytics enables longitudinal and high-throughput clonal tracking studies in hematopoietic stem cell gene therapy applications. - Giulia Pais; Giulio Spinozzi; Daniela Cesana; Fabrizio Benedicenti; Alessandra Albertini; Maria Ester Bernardo; Bernhard Gentner; Eugenio Montini; Andrea Calabria (Briefings Bioinform., 2023)