Logical modelling and analysis of the budding yeast cell cycle. - Adrien Fauré; Claudine Chaouiya; Andrea Ciliberto; Denis Thieffry (BMC Bioinform., 2007)

Modeling Networks of Coupled Enzymatic Reactions Using the Total Quasi-Steady State Approximation. - Andrea Ciliberto; Fabrizio Capuani; John J. Tyson (PLoS Comput. Biol., 2007)

The Eps8/IRSp53/VASP Network Differentially Controls Actin Capping and Bundling in Filopodia Formation. - Federico Vaggi; Andrea Disanza; Francesca Milanesi; Pier Paolo Di Fiore; Elisabetta Menna; Michela Matteoli; Nir S. Gov; Giorgio Scita; Andrea Ciliberto (PLoS Comput. Biol., 2011)

Implications of alternative routes to APC/C inhibition by the mitotic checkpoint complex. - Fridolin Gross; Paolo Bonaiuti; Silke Hauf; Andrea Ciliberto (PLoS Comput. Biol., 2018)

Enhancing Cell Tracking with a Time-Symmetric Deep Learning Approach. - Gergely Szabó; Paolo Bonaiuti; Andrea Ciliberto; András Horváth (CoRR, 2023)

lncreased risk of slippage upon disengagement of the mitotic checkpoint. - Alma Beatrix Stier; Paolo Bonaiuti; János Juhász; Fridolin Gross; Andrea Ciliberto (PLoS Comput. Biol., 2025)