Rediscovery rate estimation for assessing the validation of significant findings in high-throughput studies. - Andrea Ganna; Donghwan Lee 001; Erik Ingelsson; Yudi Pawitan (Briefings Bioinform., 2015)

The impact of rare variation on gene expression across tissues. - Xin Li 130; Yungil Kim; Emily K. Tsang; Joe R. Davis; Farhan N. Damani; Colby Chiang; Gaelen T. Hess; Zachary Zappala; Benjamin J. Strober; Alexandra J. Scott; Amy Li; Andrea Ganna; et al. (Nat., 2017)

Variant Score Ranker - a web application for intuitive missense variant prioritization. - Juanjiangmeng Du; Monica Sudarsanam; Eduardo Pérez-Palma; Andrea Ganna; Laurent C. Francioli; Sumaiya Iqbal; Lisa-Marie Niestroj; Costin Leu; Ben Weisburd; Timothy Poterba; Peter Nürnberg; Mark J. Daly; et al. (Bioinform., 2019)

Characterizing personalized effects of family information on disease risk using graph representation learning. - Sophie Wharrie; Zhiyu Yang; Andrea Ganna; Samuel Kaski (MLHC, 2023)

HAPNEST: efficient, large-scale generation and evaluation of synthetic datasets for genotypes and phenotypes. - Sophie Wharrie; Zhiyu Yang; Vishnu Raj; Remo Monti; Rahul Gupta; Ying Wang 074; Alicia Martin; Luke J. O'Connor; Samuel Kaski; Pekka Marttinen; Pier Francesco Palamara; Christoph Lippert; et al. (Bioinform., 2023)

Towards modeling evolving longitudinal health trajectories with a transformer-based deep learning model. - Hans Moen; Vishnu Raj; Andrius Vabalas; Markus Perola; Samuel Kaski; Andrea Ganna; Pekka Marttinen (CoRR, 2024)