BRIO: a web server for RNA sequence and structure motif scan. - Andrea Guarracino; Gerardo Pepe; Francesco Ballesio; Marta Adinolfi; Marco Pietrosanto; Elisa Sangiovanni; Ilio Vitale; Gabriele Ausiello; Manuela Helmer-Citterich (Nucleic Acids Res., 2021)

ODGI: understanding pangenome graphs. - Andrea Guarracino; Simon Heumos; Sven Nahnsen; Pjotr Prins; Erik Garrison (Bioinform., 2022)

Unbiased pangenome graphs. - Erik Garrison; Andrea Guarracino (Bioinform., 2023)

Optimal gap-affine alignment in O(s) space. - Santiago Marco-Sola; Jordan M. Eizenga; Andrea Guarracino; Benedict Paten; Erik Garrison; Miquel Moretó (Bioinform., 2023)

Rapid GPU-Based Pangenome Graph Layout. - Jiajie Li; Jan-Niklas Schmelzle; Yixiao Du; Simon Heumos; Andrea Guarracino; Giulia Guidi; Pjotr Prins; Erik Garrison; Zhiru Zhang (SC, 2024)