Investigating Co-infection Dynamics through Evolution of Bio-PEPA Model Parameters: A Combined Process Algebra and Evolutionary Computing Approach. - David Marco; Erin Scott; David E. Cairns; Andrea L. Graham; Judi Allen; Simmi Mahajan; Carron Shankland (CMSB, 2012)

Universal or Specific? A Modeling-Based Comparison of Broad-Spectrum Influenza Vaccines against Conventional, Strain-Matched Vaccines. - Rahul Subramanian; Andrea L. Graham; Bryan T. Grenfell; Nimalan Arinaminpathy (PLoS Comput. Biol., 2016)

Quorum sensing via dynamic cytokine signaling comprehensively explains divergent patterns of effector choice among helper T cells. - Edward C. Schrom II; Simon A. Levin; Andrea L. Graham (PLoS Comput. Biol., 2020)

Challenges in cybersecurity: Lessons from biological defense systems. - Edward C. Schrom II; Ann Kinzig; Stephanie Forrest; Andrea L. Graham; Simon A. Levin; Carl T. Bergstrom; Carlos Castillo-Chavez; James P. Collins 002; Rob J. De Boer; Adam Doupé; Roya Ensafi; Stuart I. Feldman; et al. (CoRR, 2021)

Optimal immune specificity at the intersection of host life history and parasite epidemiology. - Alexander E. Downie; Andreas Mayer; C. Jessica E. Metcalf; Andrea L. Graham (PLoS Comput. Biol., 2021)

serosim: An R package for simulating serological data arising from vaccination, epidemiological and antibody kinetics processes. - Arthur Menezes; Saki Takahashi; Isobel Routledge; C. Jessica E. Metcalf; Andrea L. Graham; James A. Hay (PLoS Comput. Biol., 2023)

Dose-dependent interaction of parasites with tiers of host defense predicts "wormholes" that prolong infection at intermediate inoculum sizes. - Andrea L. Graham; Roland R. Regoes (PLoS Comput. Biol., 2024)

Impact of waning immunity against SARS-CoV-2 severity exacerbated by vaccine hesitancy. - Chadi M. Saad-Roy; Sinead E. Morris; Mike Boots; Rachel E. Baker; Bryan L. Lewis; Jeremy Farrar; Madhav V. Marathe; Andrea L. Graham; Simon A. Levin; Caroline E. Wagner; C. Jessica E. Metcalf; Bryan T. Grenfell (PLoS Comput. Biol., 2024)