GMXPBSA 2.0: A GROMACS tool to perform MM/PBSA and computational alanine scanning. - Cristina Paissoni; Dimitrios Spiliotopoulos; Giovanna Musco; Andrea Spitaleri (Comput. Phys. Commun., 2014)

GMXPBSA 2.1: A GROMACS tool to perform MM/PBSA and computational alanine scanning. - Cristina Paissoni; Dimitrios Spiliotopoulos; Giovanna Musco; Andrea Spitaleri (Comput. Phys. Commun., 2015)

BiKi Life Sciences: A New Suite for Molecular Dynamics and Related Methods in Drug Discovery. - Sergio Decherchi; Giovanni Bottegoni; Andrea Spitaleri; Walter Rocchia; Andrea Cavalli (J. Chem. Inf. Model., 2018)

Addendum to BiKi Life Sciences: A New Suite for Molecular Dynamics and Related Methods in Drug Discovery. - Sergio Decherchi; Giovanni Bottegoni; Andrea Spitaleri; Walter Rocchia; Andrea Cavalli (J. Chem. Inf. Model., 2018)

NanoShaper-VMD interface: computing and visualizing surfaces, pockets and channels in molecular systems. - Sergio Decherchi; Andrea Spitaleri; John E. Stone; Walter Rocchia (Bioinform., 2019)