Evolutionary patterns of non-coding RNAs. - Athanasius F. Bompfünewerer; Christoph Flamm; Claudia Fried; Guido Fritzsch; Ivo L. Hofacker; Jörg Lehmann; Kristin Missal; Axel Mosig; Bettina Müller; Sonja J. Prohaska; Bärbel M. R. Stadler; Peter F. Stadler; et al. (Theory Biosci., 2005)

2D Meets 4G: G-Quadruplexes in RNA Secondary Structure Prediction. - Ronny Lorenz; Stephan H. Bernhart; Jing Qin 006; Christian Höner zu Siederdissen; Andrea Tanzer; Fabian Amman; Ivo L. Hofacker; Peter F. Stadler (IEEE ACM Trans. Comput. Biol. Bioinform., 2013)

AREsite2: an enhanced database for the comprehensive investigation of AU/GU/U-rich elements. - Jörg Fallmann; Vitaly Sedlyarov; Andrea Tanzer; Pavel Kovarik; Ivo L. Hofacker (Nucleic Acids Res., 2016)

RNAxplorer: harnessing the power of guiding potentials to sample RNA landscapes. - Gregor Entzian; Ivo L. Hofacker; Yann Ponty; Ronny Lorenz; Andrea Tanzer (Bioinform., 2021)