PrediSi: prediction of signal peptides and their cleavage positions. - Karsten Hiller; Andreas Grote; Maurice Scheer; Richard Münch; Dieter Jahn (Nucleic Acids Res., 2004)

Virtual Footprint and PRODORIC: an integrative framework for regulon prediction in prokaryotes. - Richard Münch; Karsten Hiller; Andreas Grote; Maurice Scheer; Johannes Klein; Max Schobert; Dieter Jahn (Bioinform., 2005)

JCat: a novel tool to adapt codon usage of a target gene to its potential expression host. - Andreas Grote; Karsten Hiller; Maurice Scheer; Richard Münch; Bernd Nörtemann; Dietmar C. Hempel; Dieter Jahn (Nucleic Acids Res., 2005)

JVirGel 2.0: computational prediction of proteomes separated via two-dimensional gel electrophoresis under consideration of membrane and secreted proteins. - Karsten Hiller; Andreas Grote; Matthias Maneck; Richard Münch; Dieter Jahn (Bioinform., 2006)

JProGO: a novel tool for the functional interpretation of prokaryotic microarray data using Gene Ontology information. - Maurice Scheer; Frank Klawonn; Richard Münch; Andreas Grote; Karsten Hiller; Claudia Choi; Ina Koch; Max Schobert; Elisabeth Härtig; Ulrich Klages; Dieter Jahn (Nucleic Acids Res., 2006)

SYSTOMONAS - an integrated database for systems biology analysis of Pseudomonas. - Claudia Choi; Richard Münch; Stefan Leupold; Johannes Klein; Inga Siegel; Bernhard Thielen; Beatrice Benkert; Martin Kucklick; Max Schobert; Jens Barthelmes; Christian Ebeling; Isam Haddad; et al. (Nucleic Acids Res., 2007)

BRENDA, AMENDA and FRENDA the enzyme information system: new content and tools in 2009. - Antje Chang; Maurice Scheer; Andreas Grote; Ida Schomburg; Dietmar Schomburg (Nucleic Acids Res., 2009)

PRODORIC (release 2009): a database and tool platform for the analysis of gene regulation in prokaryotes. - Andreas Grote; Johannes Klein; Ida Retter; Isam Haddad; Susanne Behling; Boyke Bunk; Ilona Biegler; Svitlana Yarmolinetz; Dieter Jahn; Richard Münch (Nucleic Acids Res., 2009)

The BRENDA Tissue Ontology (BTO): the first all-integrating ontology of all organisms for enzyme sources. - Marion Gremse; Antje Chang; Ida Schomburg; Andreas Grote; Maurice Scheer; Christian Ebeling; Dietmar Schomburg (Nucleic Acids Res., 2011)

BRENDA, the enzyme information system in 2011. - Maurice Scheer; Andreas Grote; Antje Chang; Ida Schomburg; Cornelia Munaretto; Michael Rother; Carola Söhngen; Michael Stelzer; Juliane Thiele; Dietmar Schomburg (Nucleic Acids Res., 2011)

BRENDA in 2013: integrated reactions, kinetic data, enzyme function data, improved disease classification: new options and contents in BRENDA. - Ida Schomburg; Antje Chang; Sandra Placzek; Carola Söhngen; Michael Rother; Maren Lang; Cornelia Munaretto; Susanne Ulas; Michael Stelzer; Andreas Grote; Maurice Scheer; Dietmar Schomburg (Nucleic Acids Res., 2013)