The Role of Compensatory Mutations in the Emergence of Drug Resistance. - Andreas Handel; Roland R. Regoes; Rustom Antia (PLoS Comput. Biol., 2006)

Neuraminidase Inhibitor Resistance in Influenza: Assessing the Danger of Its Generation and Spread. - Andreas Handel; Ira M. Longini Jr.; Rustom Antia (PLoS Comput. Biol., 2007)

Correction: The Role of Compensatory Mutations in the Emergence of Drug Resistance. - Andreas Handel; Roland R. Regoes; Rustom Antia (PLoS Comput. Biol., 2007)

A Multi-scale Analysis of Influenza A Virus Fitness Trade-offs due to Temperature-dependent Virus Persistence. - Andreas Handel; Justin Brown; David E. Stallknecht; Pejman Rohani (PLoS Comput. Biol., 2013)

Learning infectious disease epidemiology in a modern framework. - Andreas Handel (PLoS Comput. Biol., 2017)

Exploring the impact of inoculum dose on host immunity and morbidity to inform model-based vaccine design. - Andreas Handel; Yan Li; Brian McKay; Kasia A. Pawelek; Veronika Zarnitsyna; Rustom Antia (PLoS Comput. Biol., 2018)

A Bayesian approach to estimate parameters of ordinary differential equation. - Hanwen Huang; Andreas Handel; Xiao Song (Comput. Stat., 2020)

A data-driven semi-parametric model of SARS-CoV-2 transmission in the United States. - John M. Drake; Andreas Handel; Éric Marty; Eamon B. O'Dea; Tierney O'Sullivan; Giovanni Righi; Andrew T. Tredennick (PLoS Comput. Biol., 2023)