Estimating the significance of sequence order in protein secondary structure and prediction. - Jong-Chan Park; Sabine Dietmann; Andreas Heger; Liisa Holm (Bioinform., 2000)

RSDB: representative protein sequence databases have high information content. - Jong-Chan Park; Liisa Holm; Andreas Heger; Cyrus Chothia (Bioinform., 2000)

Picasso: generating a covering set of protein family profiles. - Andreas Heger; Liisa Holm (Bioinform., 2001)

A fully automatic evolutionary classification of protein folds: Dali Domain Dictionary version 3. - Sabine Dietmann; Jong-Chan Park; Cédric Notredame; Andreas Heger; Michael Lappe; Liisa Holm (Nucleic Acids Res., 2001)

Sensitive pattern discovery with 'fuzzy' alignments of distantly related proteins. - Andreas Heger; Liisa Holm (ISMB (Supplement of Bioinformatics), 2003)

Accurate Detection of Very Sparse Sequence Motifs. - Andreas Heger; Michael Lappe; Liisa Holm (J. Comput. Biol., 2004)

ADDA: a domain database with global coverage of the protein universe. - Andreas Heger; Christopher Andrew Wilton; Ashwin Sivakumar; Liisa Holm (Nucleic Acids Res., 2005)

The global trace graph, a novel paradigm for searching protein sequence databases. - Andreas Heger; Swapan Mallick; Christopher Andrew Wilton; Liisa Holm (Bioinform., 2007)

PairsDB atlas of protein sequence space. - Andreas Heger; Eija Korpelainen; Taavi Hupponen; Kimmo Mattila; Vesa Ollikainen; Liisa Holm (Nucleic Acids Res., 2008)

OPTIC: orthologous and paralogous transcripts in clades. - Andreas Heger; Chris P. Ponting (Nucleic Acids Res., 2008)

The Pfam protein families database. - Robert D. Finn; Jaina Mistry; John G. Tate; Penny C. Coggill; Andreas Heger; Joanne E. Pollington; O. Luke Gavin; Prasad Gunasekaran; Goran Ceric; Kristoffer Forslund; Liisa Holm; Erik L. L. Sonnhammer; et al. (Nucleic Acids Res., 2010)

The Pfam protein families database. - Marco Punta; Penny C. Coggill; Ruth Y. Eberhardt; Jaina Mistry; John G. Tate; Chris Boursnell; Ningze Pang; Kristoffer Forslund; Goran Ceric; Jody Clements; Andreas Heger; Liisa Holm; et al. (Nucleic Acids Res., 2012)

GAT: a simulation framework for testing the association of genomic intervals. - Andreas Heger; Caleb Webber; Martin Goodson; Chris P. Ponting; Gerton Lunter (Bioinform., 2013)

CGAT: computational genomics analysis toolkit. - David Sims; Nicholas E. Ilott; Stephen N. Sansom; Ian M. Sudbery; Jethro S. Johnson; Katherine A. Fawcett; Antonio J. Berlanga-Taylor; Sebastian Luna-Valero; Chris P. Ponting; Andreas Heger (Bioinform., 2014)

Pfam: the protein families database. - Robert D. Finn; Alex Bateman; Jody Clements; Penelope Coggill; Ruth Y. Eberhardt; Sean R. Eddy; Andreas Heger; Kirstie Hetherington; Liisa Holm; Jaina Mistry; Erik L. L. Sonnhammer; John G. Tate; et al. (Nucleic Acids Res., 2014)

CGAT-core: a python framework for building scalable, reproducible computational biology workflows. - Adam P. Cribbs; Sebastian Luna-Valero; Charlotte George; Ian M. Sudbery; Antonio J. Berlanga-Taylor; Stephen N. Sansom; Tom Smith; Nicholas E. Ilott; Jethro S. Johnson; Jakub Scaber; Katherine Brown; David Sims; et al. (F1000Research, 2019)