DEQOR: a web-based tool for the design and quality control of siRNAs. - Andreas Henschel; Frank Buchholz; Bianca Habermann (Nucleic Acids Res., 2004)

Equivalent binding sites reveal convergently evolved interaction motifs. - Andreas Henschel; Wan Kyu Kim; Michael Schroeder 001 (Bioinform., 2006)

SCOPPI: a structural classification of protein-protein interfaces. - Christof Winter; Andreas Henschel; Wan Kyu Kim; Michael Schroeder 001 (Nucleic Acids Res., 2006)

The Many Faces of Protein-Protein Interactions: A Compendium of Interface Geometry. - Wan Kyu Kim; Andreas Henschel; Christof Winter; Michael Schroeder 001 (PLoS Comput. Biol., 2006)

Using structural motif descriptors for sequence-based binding site prediction. - Andreas Henschel; Christof Winter; Wan Kyu Kim; Michael Schroeder 001 (BMC Bioinform., 2007)

A structural classification of protein-protein interactions for detection of convergently evolved motifs and for prediction of protein binding sites on sequence level. - Andreas Henschel (2008)

Strukturbasiertes Klassifizieren von Protein-Proteininteraktionen [A Structural Classification of Protein-Protein Interactions for Detection of Convergently Evolved Motifs and for the Predictions of Protein Binding Sites on Sequence Level]. - Andreas Henschel (Ausgezeichnete Informatikdissertationen, 2008)

Structural fragment clustering reveals novel structural and functional motifs in alpha-helical transmembrane proteins. - Annalisa Marsico; Andreas Henschel; Christof Winter; Anne Tuukkanen; Boris Vassilev; Kerstin Scheubert; Michael Schroeder 001 (BMC Bioinform., 2010)

MeMotif: a database of linear motifs in α-helical transmembrane proteins. - Annalisa Marsico; Kerstin Scheubert; Anne Tuukkanen; Andreas Henschel; Christof Winter; Rainer Winnenburg; Michael Schroeder 001 (Nucleic Acids Res., 2010)

Integration of thermal management and floorplanning based on three-dimensional layout representations. - Puskar Budhathoki; Johann Knechtel; Andreas Henschel; Ibrahim Abe M. Elfadel (ICECS, 2013)

Thermal-driven 3D floorplanning using localized TSV placement. - Puskar Budhathoki; Andreas Henschel; Ibrahim Abe M. Elfadel (ICICDT, 2014)

A closed-loop location-inventory problem with spare parts consideration. - Ali Diabat; Tarek Abdallah; Andreas Henschel (Comput. Oper. Res., 2015)

Comprehensive Meta-analysis of Ontology Annotated 16S rRNA Profiles Identifies Beta Diversity Clusters of Environmental Bacterial Communities. - Andreas Henschel; Muhammad Zohaib Anwar 001; Vimitha Manohar (PLoS Comput. Biol., 2015)

Data Analysis of Correlation Between Project Popularity and Code Change Frequency. - Dabeeruddin Syed; Jadran Sessa; Andreas Henschel; Davor Svetinovic (ICONIP (4), 2016)

Visibiome: an efficient microbiome search engine based on a scalable, distributed architecture. - Syafiq Kamarul Azman; Muhammad Zohaib Anwar 001; Andreas Henschel (BMC Bioinform., 2017)

Taxonomy-aware feature engineering for microbiome classification. - Mai Oudah; Andreas Henschel (BMC Bioinform., 2018)

Eye-color and Type-2 diabetes phenotype prediction from genotype data using deep learning methods. - Muhammad Muneeb; Andreas Henschel (BMC Bioinform., 2021)

Correction to: Eye‑color and Type‑2 diabetes phenotype prediction from genotype data using deep learning methods. - Muhammad Muneeb; Andreas Henschel (BMC Bioinform., 2021)

Foster Sustainable Software Engineering (SSE) Awareness in Large Enterprises - a Cheat Sheet for Technical and Organizational Indicators. - Alexander Poth; Andi H. Widok; Andreas Henschel; Daniela Eißfeldt (EuroSPI, 2022)

Heritability, genetic variation, and the number of risk SNPs effect on deep learning and polygenic risk scores AUC. - Muhammad Muneeb; Samuel F. Feng; Andreas Henschel (ICBBT, 2022)

Transfer learning for genotype-phenotype prediction using deep learning models. - Muhammad Muneeb; Samuel F. Feng; Andreas Henschel (BMC Bioinform., 2022)

Deep learning pipeline for image classification on mobile phones. - Muhammad Muneeb; Samuel F. Feng; Andreas Henschel (CoRR, 2022)

Can We Convert Genotype Sequences Into Images for Cases/Controls Classification? - Muhammad Muneeb; Samuel F. Feng; Andreas Henschel (Frontiers Bioinform., 2022)

Microbiome-based disease prediction with multimodal variational information bottlenecks. - Filippo Grazioli; Raman Siarheyeu; Israa Alqassem; Andreas Henschel; Giampaolo Pileggi; Andrea Meiser (PLoS Comput. Biol., 2022)

Informational Rescaling of PCA Maps with Application to Genetic Distance. - Nassim Nicholas Taleb; Pierre A. Zalloua; Khaled Elbassioni; Andreas Henschel; Daniel E. Platt (CoRR, 2023)

Critical assessment of on-premise approaches to scalable genome analysis. - Amira Al-Aamri; Syafiq Kamarul Azman; Gihan Dawelbait; Habiba AlSafar; Andreas Henschel (BMC Bioinform., 2023)

Enriching Datasets with Demographics through Large Language Models: What's in a Name? - Khaled AlNuaimi; Gautier Marti; Mathieu Ravaut; Abdulla AlKetbi; Andreas Henschel; Ra'ed M. Jaradat (CoRR, 2024)

Mapping Hong Kong's Financial Ecosystem: A Network Analysis of the SFC's Licensed Professionals and Institutions. - Abdulla AlKetbi; Gautier Marti; Khaled AlNuaimi; Ra'ed M. Jaradat; Andreas Henschel (CoRR, 2024)

Analysis of Cancer-Associated Mutations of POLB Using Machine Learning and Bioinformatics. - Razan Alkhanbouli; Amira Al-Aamri; Maher Maalouf; Kamal Taha; Andreas Henschel; Dirar Homouz (IEEE ACM Trans. Comput. Biol. Bioinform., 2024)

Utilizing machine learning for predicting drug release from polymeric drug delivery systems. - Sareh Aghajanpour; Hamid Amiriara; Mehdi Esfandyari-Manesh; Pedram Ebrahimnejad; Haziq Jeelani; Andreas Henschel; Hemant Singh; Rassoul Dinarvand; Shabir Hassan (Comput. Biol. Medicine, 2025)