Geometric Sieving: Automated Distributed Optimization of 3D Motifs for Protein Function Prediction. - Brian Y. Chen; Viacheslav Fofanov; Drew H. Bryant; Bradley D. Dodson; David M. Kristensen; Andreas Martin Lisewski; Marek Kimmel; Olivier Lichtarge; Lydia E. Kavraki (RECOMB, 2006)

The concept of strong and weak virtual reality. - Andreas Martin Lisewski (Minds Mach., 2006)

Graph-Based Protein Functional Classification. - Hyunjung Shin; Andreas Martin Lisewski; Olivier Lichtarge (BIOCOMP, 2007)

Graph sharpening plus graph integration: a synergy that improves protein functional classification. - Hyunjung Shin; Andreas Martin Lisewski; Olivier Lichtarge (Bioinform., 2007)

Can the Internet cope with stress? - Andreas Martin Lisewski (First Monday, 2007)

The MASH Pipeline for Protein Function Prediction and an Algorithm for the Geometric Refinement of 3D Motifs. - Brian Y. Chen; Viacheslav Fofanov; Drew H. Bryant; Bradley D. Dodson; David M. Kristensen; Andreas Martin Lisewski; Marek Kimmel; Olivier Lichtarge; Lydia E. Kavraki (J. Comput. Biol., 2007)

Prediction of enzyme function based on 3D templates of evolutionarily important amino acids. - David M. Kristensen; R. Matthew Ward; Andreas Martin Lisewski; Serkan Erdin; Brian Y. Chen; Viacheslav Fofanov; Marek Kimmel; Lydia E. Kavraki; Olivier Lichtarge (BMC Bioinform., 2008)

Graph sharpening. - Hyunjung Shin; N. Jeremy Hill; Andreas Martin Lisewski; Joon-Sang Park (Expert Syst. Appl., 2010)

Function prediction from networks of local evolutionary similarity in protein structure. - Serkan Erdin; Eric Venner; Andreas Martin Lisewski; Olivier Lichtarge (BMC Bioinform., 2013)

Automated hypothesis generation based on mining scientific literature. - W. Scott Spangler; Angela D. Wilkins; Benjamin J. Bachman; Meena Nagarajan; Tajhal Dayaram; Peter J. Haas; Sam Regenbogen; Curtis R. Pickering; Austin Comer; Jeffrey N. Myers; Ioana Stanoi; Linda Kato; et al. (KDD, 2014)

Predicting Future Scientific Discoveries Based on a Networked Analysis of the Past Literature. - Meenakshi Nagarajan; Angela D. Wilkins; Benjamin J. Bachman; Ilya B. Novikov; Shenghua Bao; Peter J. Haas; María E. Terrón-Díaz; Sumit Bhatia; Anbu K. Adikesavan; Jacques J. Labrie; Sam Regenbogen; Christie M. Buchovecky; et al. (KDD, 2015)