Pipasic: similarity and expression correction for strain-level identification and quantification in metaproteomics. - Anke Penzlin; Martin S. Lindner; Joerg Doellinger; Piotr Wojtek Dabrowski; Andreas Nitsche; Bernhard Y. Renard (Bioinform., 2014)

SuRankCo: supervised ranking of contigs in de novo assemblies. - Mathias Kuhring; Piotr Wojtek Dabrowski; Vitor Piro; Andreas Nitsche; Bernhard Y. Renard (BMC Bioinform., 2015)

HiLive: real-time mapping of illumina reads while sequencing. - Martin S. Lindner; Benjamin Strauch; Jakob M. Schulze; Simon H. Tausch; Piotr Wojtek Dabrowski; Andreas Nitsche; Bernhard Y. Renard (Bioinform., 2017)

WeGovNow: A Map Based Platform to Engage the Local Civic Society. - Guido Boella; Louise Francis; Elena Grassi; Axel Kistner; Andreas Nitsche; Alexey Noskov; Luigi Sanasi; Adriano Savoca; Claudio Schifanella; Ioannis Tsampoulatidis (WWW (Companion Volume), 2018)

PAIPline: pathogen identification in metagenomic and clinical next generation sequencing samples. - Andreas Andrusch; Piotr Wojtek Dabrowski; Jeanette Klenner; Simon H. Tausch; Claudia Kohl; Abdalla Osman; Bernhard Y. Renard; Andreas Nitsche (Bioinform., 2018)

PriLive: privacy-preserving real-time filtering for next-generation sequencing. - Tobias P. Loka; Simon H. Tausch; Piotr Wojtek Dabrowski; Aleksandar Radonic; Andreas Nitsche; Bernhard Y. Renard (Bioinform., 2018)

LiveKraken–real-time metagenomic classification of illumina data. - Simon H. Tausch; Benjamin Strauch; Andreas Andrusch; Tobias P. Loka; Martin S. Lindner; Andreas Nitsche; Bernhard Y. Renard (Bioinform., 2018)

Predicting bacterial virulence factors - evaluation of machine learning and negative data strategies. - Robert Rentzsch; Carlus Deneke; Andreas Nitsche; Bernhard Y. Renard (Briefings Bioinform., 2020)

An intra-host SARS-CoV-2 dynamics model to assess testing and quarantine strategies for incoming travelers, contact management, and de-isolation. - Wiep van der Toorn; Djin-Ye Oh; Daniel Bourquain; Janine Michel; Eva Krause; Andreas Nitsche; Max von Kleist (Patterns, 2021)

MpoxRadar: a worldwide MPXV genomic surveillance dashboard. - Ferdous Nasri; Kunaphas Kongkitimanon; Alice Wittig; Jorge Sánchez Cortés; Annika Brinkmann; Andreas Nitsche; Anna-Juliane Schmachtenberg; Bernhard Y. Renard; Stephan Fuchs (Nucleic Acids Res., 2023)

Enabling the Digital Democratic Revival: A Research Program for Digital Democracy. - Davide Grossi; Ulrike Hahn; Michael Mäs; Andreas Nitsche; Jan Behrens; Niclas Boehmer; Markus Brill; Ulle Endriss; Umberto Grandi; Adrian Haret; Jobst Heitzig; Nicolien Janssens; et al. (CoRR, 2024)

Delegations as Adaptive Representation Patterns: Rethinking Influence in Liquid Democracy. - Davide Grossi; Andreas Nitsche (CoRR, 2025)