WILMA - automated annotation of protein sequences. - Andreas Prlic; Francisco S. Domingues; Peter Lackner; Manfred J. Sippl (Bioinform., 2004)

Adding Some SPICE to DAS. - Andreas Prlic; Thomas A. Down; Tim J. P. Hubbard (ECCB/JBI, 2005)

The Distributed Annotation System for Integration of Biological Data. - Andreas Prlic; Ewan Birney; Tony Cox 001; Thomas A. Down; Robert D. Finn; Stefan Gräf; David K. Jackson; Andreas Kähäri; Eugene Kulesha; Roger Pettett; James A. Smith; Jim Stalker; et al. (DILS, 2006)

Ensembl 2006. - Ewan Birney; T. Daniel Andrews; Mario Cáccamo; Yuan Chen 007; Laura Clarke; Guy Coates; Tony Cox 001; Fiona Cunningham; Val Curwen; Tim Cutts; Thomas A. Down; Richard Durbin; et al. (Nucleic Acids Res., 2006)

Integrating sequence and structural biology with DAS. - Andreas Prlic; Thomas A. Down; Eugene Kulesha; Robert D. Finn; Andreas Kähäri; Tim J. P. Hubbard (BMC Bioinform., 2007)

SISYPHUS - structural alignments for proteins with non-trivial relationships. - Antonina Andreeva; Andreas Prlic; Tim J. P. Hubbard; Alexey G. Murzin (Nucleic Acids Res., 2007)

Ensembl 2007. - Tim J. P. Hubbard; Bronwen L. Aken; Kathryn Beal; Benoît Ballester; Mario Cáccamo; Yuan Chen 007; Laura Clarke; Guy Coates; Fiona Cunningham; Tim Cutts; Thomas A. Down; S. C. Dyer; et al. (Nucleic Acids Res., 2007)

BioJava: an open-source framework for bioinformatics. - Richard C. G. Holland; Thomas A. Down; Matthew R. Pocock; Andreas Prlic; David S. Huen; Keith James; Sylvain Foisy; Andreas Dräger; Andy Yates; Michael L. Heuer; Mark J. Schreiber (Bioinform., 2008)

The Protein Feature Ontology: a tool for the unification of protein feature annotations. - Gabrielle A. Reeves; Karen Eilbeck; Michele Magrane; Claire O'Donovan; Luisa Montecchi-Palazzi; Midori A. Harris; Sandra E. Orchard; Rafael C. Jiménez; Andreas Prlic; Tim J. P. Hubbard; Henning Hermjakob; Janet M. Thornton (Bioinform., 2008)

Integrating biological data - the Distributed Annotation System. - Andrew M. Jenkinson; Mario Albrecht; Ewan Birney; Hagen Blankenburg; Thomas A. Down; Robert D. Finn; Henning Hermjakob; Tim J. P. Hubbard; Rafael C. Jiménez; Philip Jones; Andreas Kähäri; Eugene Kulesha; et al. (BMC Bioinform., 2008)

Ensembl 2008. - Paul Flicek; Bronwen L. Aken; Kathryn Beal; Benoît Ballester; Mario Cáccamo; Yuan Chen 007; Laura Clarke; Guy Coates; Fiona Cunningham; Tim Cutts; Thomas A. Down; S. C. Dyer; et al. (Nucleic Acids Res., 2008)

DASMI: exchanging, annotating and assessing molecular interaction data. - Hagen Blankenburg; Robert D. Finn; Andreas Prlic; Andrew M. Jenkinson; Fidel Ramírez; Dorothea Emig; Sven-Eric Schelhorn; Joachim Büch; Thomas Lengauer; Mario Albrecht (Bioinform., 2009)

Pre-calculated protein structure alignments at the RCSB PDB website. - Andreas Prlic; Spencer Bliven; Peter W. Rose; Wolfgang Bluhm; Chris Bizon; Adam Godzik; Philip E. Bourne (Bioinform., 2010)

Integration of open access literature into the RCSB Protein Data Bank using BioLit. - Andreas Prlic; Marco A. Martinez; Dimitris Dimitropoulos; Bojan Beran; Benjamin T. Yukich; Peter W. Rose; Philip E. Bourne; J. Lynn Fink (BMC Bioinform., 2010)

Will Widgets and Semantic Tagging Change Computational Biology? - Philip E. Bourne; Bojan Beran; Chunxiao Bi; Wolfgang Bluhm; Roland L. Dunbrack Jr.; Andreas Prlic; Greg B. Quinn; Peter W. Rose; Raship Shah; Wendy Tao; Brian D. Weitzner; Benjamin T. Yukich (PLoS Comput. Biol., 2010)

Quality assurance for the query and distribution systems of the RCSB Protein Data Bank. - Wolfgang Bluhm; Bojan Beran; Chunxiao Bi; Dimitris Dimitropoulos; Andreas Prlic; Greg B. Quinn; Peter W. Rose; Chaitali Shah; Jasmine Young; Benjamin T. Yukich; Helen M. Berman; Philip E. Bourne (Database J. Biol. Databases Curation, 2011)

The RCSB Protein Data Bank: redesigned web site and web services. - Peter W. Rose; Bojan Beran; Chunxiao Bi; Wolfgang Bluhm; Dimitris Dimitropoulos; David S. Goodsell; Andreas Prlic; Martha Quesada; Greg B. Quinn; John D. Westbrook; Jasmine Young; Benjamin T. Yukich; et al. (Nucleic Acids Res., 2011)

BioJava: an open-source framework for bioinformatics in 2012. - Andreas Prlic; Andrew D. Yates; Spencer Bliven; Peter W. Rose; Julius O. B. Jacobsen; Peter V. Troshin; Mark Chapman; Jianjiong Gao; Chuan Hock Koh; Sylvain Foisy; Richard C. G. Holland; Gediminas Rimsa; et al. (Bioinform., 2012)

The PLOS Computational Biology Software Section. - Andreas Prlic; Hilmar Lapp (PLoS Comput. Biol., 2012)

Ten Simple Rules for the Open Development of Scientific Software. - Andreas Prlic; James B. Procter (PLoS Comput. Biol., 2012)

The RCSB Protein Data Bank: new resources for research and education. - Peter W. Rose; Chunxiao Bi; Wolfgang Bluhm; Cole H. Christie; Dimitris Dimitropoulos; Shuchismita Dutta; Rachel Kramer Green; David S. Goodsell; Andreas Prlic; Martha Quesada; Greg B. Quinn; Alexander G. Ramos; et al. (Nucleic Acids Res., 2013)

Detection of circular permutations within protein structures using CE-CP. - Spencer E. Bliven; Philip E. Bourne; Andreas Prlic (Bioinform., 2015)

RCSB PDB Mobile: iOS and Android mobile apps to provide data access and visualization to the RCSB Protein Data Bank. - Gregory B. Quinn; Chunxiao Bi; Cole H. Christie; Kyle Pang; Andreas Prlic; Takanori Nakane; Christine Zardecki; Maria Voigt; Helen M. Berman; Philip E. Bourne; Peter W. Rose (Bioinform., 2015)

The RCSB Protein Data Bank: views of structural biology for basic and applied research and education. - Peter W. Rose; Andreas Prlic; Chunxiao Bi; Wolfgang Bluhm; Cole H. Christie; Shuchismita Dutta; Rachel Kramer Green; David S. Goodsell; John D. Westbrook; Jesse Woo; Jasmine Young; Christine Zardecki; et al. (Nucleic Acids Res., 2015)

Web-based molecular graphics for large complexes. - Alexander S. Rose; Anthony R. Bradley; Yana Valasatava; Jose M. Duarte; Andreas Prlic; Peter W. Rose (Web3D, 2016)

Integrating genomic information with protein sequence and 3D atomic level structure at the RCSB protein data bank. - Andreas Prlic; Tara Kalro; Roshni Bhattacharya; Cole H. Christie; Stephen K. Burley; Peter W. Rose (Bioinform., 2016)

BioJava-ModFinder: identification of protein modifications in 3D structures from the Protein Data Bank. - Jianjiong Gao; Andreas Prlic; Chunxiao Bi; Wolfgang Bluhm; Dimitris Dimitropoulos; Dong Xu 002; Philip E. Bourne; Peter W. Rose (Bioinform., 2017)

The RCSB protein data bank: integrative view of protein, gene and 3D structural information. - Peter W. Rose; Andreas Prlic; Ali Altunkaya; Chunxiao Bi; Anthony R. Bradley; Cole H. Christie; Luigi Di Costanzo; Jose M. Duarte; Shuchismita Dutta; Zukang Feng; Rachel Kramer Green; David S. Goodsell; et al. (Nucleic Acids Res., 2017)

MMTF - An efficient file format for the transmission, visualization, and analysis of macromolecular structures. - Anthony R. Bradley; Alexander S. Rose; Antonín Pavelka; Yana Valasatava; Jose M. Duarte; Andreas Prlic; Peter W. Rose (PLoS Comput. Biol., 2017)

NGL viewer: web-based molecular graphics for large complexes. - Alexander S. Rose; Anthony R. Bradley; Yana Valasatava; Jose M. Duarte; Andreas Prlic; Peter W. Rose (Bioinform., 2018)

RCSB Protein Data Bank: biological macromolecular structures enabling research and education in fundamental biology, biomedicine, biotechnology and energy. - Stephen K. Burley; Helen M. Berman; Charmi Bhikadiya; Chunxiao Bi; Li Chen 022; Luigi Di Costanzo; Cole H. Christie; Kenneth Dalenberg; Jose M. Duarte; Shuchismita Dutta; Zukang Feng; Sutapa Ghosh; et al. (Nucleic Acids Res., 2019)

Analyzing the symmetrical arrangement of structural repeats in proteins with CE-Symm. - Spencer E. Bliven; Aleix Lafita; Peter W. Rose; Guido Capitani; Andreas Prlic; Philip E. Bourne (PLoS Comput. Biol., 2019)

BioJava 5: A community driven open-source bioinformatics library. - Aleix Lafita; Spencer Bliven; Andreas Prlic; Dmytro Guzenko; Peter W. Rose; Anthony R. Bradley; Paolo Pavan; Douglas Myers-Turnbull; Yana Valasatava; Michael L. Heuer; Matt Larson; Stephen K. Burley; et al. (PLoS Comput. Biol., 2019)