The RNAz web server: prediction of thermodynamically stable and evolutionarily conserved RNA structures. - Andreas R. Gruber; Richard Neuböck; Ivo L. Hofacker; Stefan Washietl (Nucleic Acids Res., 2007)

RNAalifold: improved consensus structure prediction for RNA alignments. - Stephan H. Bernhart; Ivo L. Hofacker; Sebastian Will; Andreas R. Gruber; Peter F. Stadler (BMC Bioinform., 2008)

Strategies for measuring evolutionary conservation of RNA secondary structures. - Andreas R. Gruber; Stephan H. Bernhart; Ivo L. Hofacker; Stefan Washietl (BMC Bioinform., 2008)

The Vienna RNA Websuite. - Andreas R. Gruber; Ronny Lorenz; Stephan H. Bernhart; Richard Neuböck; Ivo L. Hofacker (Nucleic Acids Res., 2008)

Non-splitting Tridiagonalization of Complex Symmetric Matrices. - Wilfried N. Gansterer; Andreas R. Gruber; Christoph Pacher (ICCS (1), 2009)

RNALfoldz: Efficient Prediction of Thermodynamically Stable, Local Secondary Structures. - Andreas R. Gruber; Stephan H. Bernhart; You Zhou; Ivo L. Hofacker (GCB, 2010)

RNAz 2.0: Improved Noncoding RNA Detection. - Andreas R. Gruber; Sven Findeiß; Stefan Washietl; Ivo L. Hofacker; Peter F. Stadler (Pacific Symposium on Biocomputing, 2010)

AREsite: a database for the comprehensive investigation of AU-rich elements. - Andreas R. Gruber; Jörg Fallmann; Franz Kratochvill; Pavel Kovarik; Ivo L. Hofacker (Nucleic Acids Res., 2011)