Structural and practical identifiability analysis of partially observed dynamical models by exploiting the profile likelihood. - Andreas Raue; Clemens Kreutz; Thomas Maiwald; Julie Bachmann; Marcel Schilling; Ursula Klingmüller; Jens Timmer (Bioinform., 2009)

Comprehensive estimation of input signals and dynamics in biochemical reaction networks. - Max Schelker; Andreas Raue; Jens Timmer; Clemens Kreutz (Bioinform., 2012)

Likelihood based observability analysis and confidence intervals for predictions of dynamic models. - Clemens Kreutz; Andreas Raue; Jens Timmer (BMC Syst. Biol., 2012)

In silico labeling reveals the time-dependent label half-life and transit-time in dynamical systems. - Thomas Maiwald; Julie Blumberg; Andreas Raue; Stefan Hengl; Marcel Schilling; Sherwin K. B. Sy; Verena Becker; Ursula Klingmüller; Jens Timmer (BMC Syst. Biol., 2012)

iVUN: interactive Visualization of Uncertain biochemical reaction Networks. - Corinna Vehlow; Jan Hasenauer; Andrei Kramer; Andreas Raue; Sabine Hug; Jens Timmer; Nicole Radde; Fabian J. Theis; Daniel Weiskopf (BMC Bioinform., 2013)

Comparison of approaches for parameter identifiability analysis of biological systems. - Andreas Raue; Johan Karlsson; Maria Pia Saccomani; Mats Jirstrand; Jens Timmer (Bioinform., 2014)

Network topology and parameter estimation: from experimental design methods to gene regulatory network kinetics using a community based approach. - Pablo Meyer 001; Thomas Cokelaer; Deepak Chandran; Kyung Hyuk Kim; Po-Ru Loh; George Tucker; Mark Lipson; Bonnie Berger; Clemens Kreutz; Andreas Raue; Bernhard Steiert; Jens Timmer; et al. (BMC Syst. Biol., 2014)

Data2Dynamics: a modeling environment tailored to parameter estimation in dynamical systems. - Andreas Raue; Bernhard Steiert; Max Schelker; Clemens Kreutz; Tim Maiwald; Helge Hass; Joep Vanlier; Christian Tönsing; Lorenz Adlung; Raphael Engesser; Wolfgang Mader 002; Tim Heinemann; et al. (Bioinform., 2015)

Disentangling the Complexity of HGF Signaling by Combining Qualitative and Quantitative Modeling. - Lorenza Alice D'Alessandro; Regina Samaga; Tim Maiwald; Seong-Hwan Rho; Sandra Bonefas; Andreas Raue; Nao Iwamoto; Alexandra Kienast; Katharina Waldow; Rene Meyer; Marcel Schilling; Jens Timmer; et al. (PLoS Comput. Biol., 2015)

Summary of the DREAM8 Parameter Estimation Challenge: Toward Parameter Identification for Whole-Cell Models. - Jonathan R. Karr; Alex H. Williams; Jeremy D. Zucker; Andreas Raue; Bernhard Steiert; Jens Timmer; Clemens Kreutz; Simon Wilkinson; Brandon A. Allgood; Brian M. Bot; Bruce R. Hoff; Michael R. Kellen; et al. (PLoS Comput. Biol., 2015)

Identification of Cell Type-Specific Differences in Erythropoietin Receptor Signaling in Primary Erythroid and Lung Cancer Cells. - Ruth Merkle; Bernhard Steiert; Florian Salopiata; Sofia Depner; Andreas Raue; Nao Iwamoto; Max Schelker; Helge Hass; Marvin Wäsch; Martin E. Böhm; Oliver Mücke; Daniel B. Lipka; et al. (PLoS Comput. Biol., 2016)