MIPS: analysis and annotation of proteins from whole genomes. - Hans-Werner Mewes; Clara Amid; Roland Arnold; Dmitrij Frishman; Ulrich Güldener; Gertrud Mannhaupt; Martin Münsterkötter; Philipp Pagel; Normann Strack; Volker Stümpflen; Jens Warfsmann; Andreas Ruepp (Nucleic Acids Res., 2004)

The MIPS mammalian protein?Cprotein interaction database. - Philipp Pagel; Stefan Kovac; Matthias Oesterheld; Barbara Brauner; Irmtraud Dunger-Kaltenbach; Goar Frishman; Corinna Montrone; Pekka Mark; Volker Stümpflen; Hans-Werner Mewes; Andreas Ruepp; Dmitrij Frishman (Bioinform., 2005)

MIPS bacterial genomes functional annotation benchmark dataset. - Igor V. Tetko; Barbara Brauner; Irmtraud Dunger-Kaltenbach; Goar Frishman; Corinna Montrone; Gisela Fobo; Andreas Ruepp; Alexey V. Antonov; Dimitrij Surmeli; Hans-Werner Mewes (Bioinform., 2005)

Super paramagnetic clustering of protein sequences. - Igor V. Tetko; Axel Facius; Andreas Ruepp; Hans-Werner Mewes (BMC Bioinform., 2005)

MPact: the MIPS protein interaction resource on yeast. - Ulrich Güldener; Martin Münsterkötter; Matthias Oesterheld; Philipp Pagel; Andreas Ruepp; Hans-Werner Mewes; Volker Stümpflen (Nucleic Acids Res., 2006)

MIPS: analysis and annotation of proteins from whole genomes in 2005. - Hans-Werner Mewes; Dmitrij Frishman; Klaus F. X. Mayer; Martin Münsterkötter; Octave Noubibou; Philipp Pagel; Thomas Rattei; Matthias Oesterheld; Andreas Ruepp; Volker Stümpflen (Nucleic Acids Res., 2006)

MitoP2: the mitochondrial proteome database - now including mouse data. - Holger Prokisch; Christophe Andreoli; U. Ahting; K. Heiss; Andreas Ruepp; Curt Scharfe; Thomas Meitinger (Nucleic Acids Res., 2006)

The Mouse Functional Genome Database (MfunGD): functional annotation of proteins in the light of their cellular context. - Andreas Ruepp; Octave Noubibou Doudieu; Jos van den Oever; Barbara Brauner; Irmtraud Dunger-Kaltenbach; Gisela Fobo; Goar Frishman; Corinna Montrone; Christine Skornia; Steffi Wanka; Thomas Rattei; Philipp Pagel; et al. (Nucleic Acids Res., 2006)

MIPS: analysis and annotation of genome information in 2007. - Hans-Werner Mewes; Sabine Dietmann; Dmitrij Frishman; Richard Gregory 003; Gertrud Mannhaupt; Klaus F. X. Mayer; Martin Münsterkötter; Andreas Ruepp; Manuel Spannagl; Volker Stümpflen; Thomas Rattei (Nucleic Acids Res., 2008)

CORUM: the comprehensive resource of mammalian protein complexes. - Andreas Ruepp; Barbara Brauner; Irmtraud Dunger-Kaltenbach; Goar Frishman; Corinna Montrone; Michael Stransky; Brigitte Waegele; Thorsten Schmidt; Octave Noubibou Doudieu; Volker Stümpflen; Hans-Werner Mewes (Nucleic Acids Res., 2008)

OREST: the online resource for EST analysis. - Brigitte Waegele; Thorsten Schmidt; Hans-Werner Mewes; Andreas Ruepp (Nucleic Acids Res., 2008)

CRONOS: the cross-reference navigation server. - Brigitte Waegele; Irmtraud Dunger-Kaltenbach; Gisela Fobo; Corinna Montrone; Hans-Werner Mewes; Andreas Ruepp (Bioinform., 2009)

CORUM: the comprehensive resource of mammalian protein complexes - 2009. - Andreas Ruepp; Brigitte Waegele; Martin Lechner; Barbara Brauner; Irmtraud Dunger-Kaltenbach; Gisela Fobo; Goar Frishman; Corinna Montrone; Hans-Werner Mewes (Nucleic Acids Res., 2010)

The Negatome database: a reference set of non-interacting protein pairs. - Pawel Smialowski; Philipp Pagel; Philip Wong; Barbara Brauner; Irmtraud Dunger; Gisela Fobo; Goar Frishman; Corinna Montrone; Thomas Rattei; Dmitrij Frishman; Andreas Ruepp (Nucleic Acids Res., 2010)

MicroRNAs coordinately regulate protein complexes. - Steffen Sass; Sabine Dietmann; Ulrike C. Burk; Simone Brabletz; Dominik Lutter; Andreas Kowarsch; Klaus F. X. Mayer; Thomas Brabletz; Andreas Ruepp; Fabian J. Theis; Yu Wang 008 (BMC Syst. Biol., 2011)

MIPS: curated databases and comprehensive secondary data resources in 2010. - Hans-Werner Mewes; Andreas Ruepp; Fabian J. Theis; Thomas Rattei; Mathias C. Walter; Dmitrij Frishman; Karsten Suhre; Manuel Spannagl; Klaus F. X. Mayer; Volker Stümpflen; Alexey V. Antonov (Nucleic Acids Res., 2011)

HoPaCI-DB: host-Pseudomonas and Coxiella interaction database. - Sophie Bleves; Irmtraud Dunger; Mathias C. Walter; Dimitrios Frangoulidis; Gabi Kastenmüller; Romé Voulhoux; Andreas Ruepp (Nucleic Acids Res., 2014)

Negatome 2.0: a database of non-interacting proteins derived by literature mining, manual annotation and protein structure analysis. - Philipp Blohm; Goar Frishman; Pawel Smialowski; Florian Goebels; Benedikt Wachinger; Andreas Ruepp; Dmitrij Frishman (Nucleic Acids Res., 2014)

CORUM: the comprehensive resource of mammalian protein complexes - 2019. - Madalina Giurgiu; Julian Reinhard; Barbara Brauner; Irmtraud Dunger-Kaltenbach; Gisela Fobo; Goar Frishman; Corinna Montrone; Andreas Ruepp (Nucleic Acids Res., 2019)

CORUM: the comprehensive resource of mammalian protein complexes-2022. - George Tsitsiridis; Ralph Steinkamp; Madalina Giurgiu; Barbara Brauner; Gisela Fobo; Goar Frishman; Corinna Montrone; Andreas Ruepp (Nucleic Acids Res., 2023)