MASQOT: a method for cDNA microarray spot quality control. - Max Bylesjö; Daniel Eriksson; Andreas Sjödin; Michael Sjöström; Stefan Jansson; Henrik Antti; Johan Trygg (BMC Bioinform., 2005)

MASQOT-GUI: spot quality assessment for the two-channel microarray platform. - Max Bylesjö; Andreas Sjödin; Daniel Eriksson; Henrik Antti; Thomas Moritz; Stefan Jansson; Johan Trygg (Bioinform., 2006)

Orthogonal projections to latent structures as a strategy for microarray data normalization. - Max Bylesjö; Daniel Eriksson; Andreas Sjödin; Stefan Jansson; Thomas Moritz; Johan Trygg (BMC Bioinform., 2007)

The SEQanswers wiki: a wiki database of tools for high-throughput sequencing analysis. - Jing-Woei Li; Keith Robison; Marcel Martin; Andreas Sjödin; Björn Usadel; Matthew Young; Eric C. Olivares; Dan M. Bolser (Nucleic Acids Res., 2012)

CanSNPer: a hierarchical genotype classifier of clonal pathogens. - Adrian Lärkeryd; Kerstin Myrtennäs; Edvin Karlsson; Chinmay Kumar Dwibedi; Mats Forsman; Pär Larsson; Anders Johansson; Andreas Sjödin (Bioinform., 2014)

doepipeline: a systematic approach to optimizing multi-level and multi-step data processing workflows. - Daniel Svensson; Rickard Sjögren; David Sundell; Andreas Sjödin; Johan Trygg (BMC Bioinform., 2019)

FlexTaxD: flexible modification of taxonomy databases for improved sequence classification. - David Sundell; Caroline Öhrman; Daniel Svensson; Edvin Karlsson; Björn Brindefalk; Kerstin Myrtennäs; Jon Ahlinder; Markus H. Antwerpen; Mathias C. Walter; Mats Forsman; Per Stenberg; Andreas Sjödin (Bioinform., 2021)

sourmash v4: A multitool to quickly search, compare, and analyze genomic and metagenomic data sets. - Luiz Irber; N. Tessa Pierce-Ward; Mohamed Abuelanin; Harriet Alexander; Abhishek Anant; Keya Barve; Colton Baumler; Olga B. Botvinnik; Phillip Brooks; Daniel Dsouza; Gautier Laurent; Mahmudur Rahman Hera; et al. (J. Open Source Softw., 2024)

Nanometa Live: a user-friendly application for real-time metagenomic data analysis and pathogen identification. - Kristofer Sandås; Jacob Lewerentz; Edvin Karlsson; Linda Karlsson; David Sundell; Kotryna Simonyté-Sjödin; Andreas Sjödin (Bioinform., 2024)