Dynamic Line Integral Convolution for Visualizing Streamline Evolution. - Andreas Sundquist (IEEE Trans. Vis. Comput. Graph., 2003)

Effects of Genetic Divergence in Identifying Ancestral Origin Using HAPAA. - Andreas Sundquist; Eugene Fratkin; Chuong B. Do; Serafim Batzoglou (RECOMB, 2008)

Algorithms for next-generation sequencing. - Andreas Sundquist (2008)

Reconstruction of genealogical relationships with applications to Phase III of HapMap. - Sofia Kyriazopoulou-Panagiotopoulou; Dorna Kashef Haghighi; Sarah J. Aerni; Andreas Sundquist; Sivan Bercovici; Serafim Batzoglou (Bioinform., 2011)

Launching genomics into the cloud: deployment of Mercury, a next generation sequence analysis pipeline. - Jeffrey G. Reid; Andrew Carroll; Narayanan Veeraraghavan; Mahmoud Dahdouli; Andreas Sundquist; Adam C. English; Matthew N. Bainbridge; Simon White; William J. Salerno; Christian Buhay; Fuli Yu; Donna M. Muzny; et al. (BMC Bioinform., 2014)