Analysis of Conserved Hydrophobic Cores in Proteins and Supramolecular Complexes. - Anna S. Karyagina; Anna S. Ershova; Mikhail Titov; Ivan Olovnikov; Evgeniy Aksianov; Alexandra Ryazanova; Elena Kubareva; Sergei A. Spirin; Andrei Alexeevski (J. Bioinform. Comput. Biol., 2006)

NPIDB: a Database of Nucleic Acids-Protein Interactions. - Sergei A. Spirin; Mikhail Titov; Anna S. Karyagina; Andrei Alexeevski (Bioinform., 2007)

Conserved water molecules in X-Ray Structures Highlight the Role of water in intramolecular and intermolecular Interactions. - Evgeniy Aksianov; Olga Zanegina; Alexander Grishin; Sergei A. Spirin; Anna S. Karyagina; Andrei Alexeevski (J. Bioinform. Comput. Biol., 2008)

Malakite: an Automatic Tool for Characterisation of Structure of Reliable Blocks in Multiple alignments of protein Sequences. - Boris Burkov; Boris Nagaev; Sergei A. Spirin; Andrei Alexeevski (J. Bioinform. Comput. Biol., 2010)

Identification of conserved Features of Laglidadg Homing endonucleases. - Alexander Grishin; Ines Fonfara; Andrei Alexeevski; Sergei A. Spirin; Olga Zanegina; Anna S. Karyagina; Daniil Alexeyevsky; Wolfgang Wende (J. Bioinform. Comput. Biol., 2010)

Exclusive Sequences of Different genomes. - Sergey I. Mitrofanov; Alexander Y. Panchin; Sergei A. Spirin; Andrei Alexeevski; Yuri V. Panchin (J. Bioinform. Comput. Biol., 2010)

New Words in Human Mutagenesis. - Alexander Y. Panchin; Sergey I. Mitrofanov; Andrei Alexeevski; Sergei A. Spirin; Yuri V. Panchin (BMC Bioinform., 2011)

Sheep: a Tool for Description of β-Sheets in protein 3D Structures. - Evgeniy Aksianov; Andrei Alexeevski (J. Bioinform. Comput. Biol., 2012)

NPIDB: nucleic acid - protein interaction database. - Dmitry D. Kirsanov; Olga Zanegina; Evgeniy Aksianov; Sergei A. Spirin; Anna S. Karyagina; Andrei Alexeevski (Nucleic Acids Res., 2013)

Co-evolution analysis to predict protein-protein interactions within influenza virus envelope. - Ramil R. Mintaev; Andrei V. Alexeevski; Larisa V. Kordyukova (J. Bioinform. Comput. Biol., 2014)

Conserved features of complexes of TATA-box binding proteins with DNA. - Olga Zanegina; Evgeniy Aksianov; Andrei V. Alexeevski; Anna S. Karyagina; Sergei A. Spirin (J. Bioinform. Comput. Biol., 2016)

An updated version of NPIDB includes new classifications of DNA-protein complexes and their families. - Olga Zanegina; Dmitry D. Kirsanov; Eugene Baulin; Anna S. Karyagina; Andrei Alexeevski; Sergei A. Spirin (Nucleic Acids Res., 2016)