Computation of the Posterior Entropy in a Bayesian Framework for Parameter Estimation in Biological Networks. - Andrei Kramer; Jan Hasenauer; Frank Allgöwer; Nicole Radde (CCA, 2010)

Towards experimental design using a Bayesian framework for parameter identification in dynamic intracellular network models. - Andrei Kramer; Nicole Radde (ICCS, 2010)

Uncertainty-aware visual analysis of biochemical reaction networks. - Corinna Vehlow; Jan Hasenauer; Andrei Kramer; Julian Heinrich; Nicole Radde; Frank Allgöwer; Daniel Weiskopf (BioVis, 2012)

Trajectory-oriented Bayesian experiment design versus Fisher A-optimal design: an in depth comparison study. - Patrick Weber; Andrei Kramer; Clemens Dingler; Nicole Radde (Bioinform., 2012)

iVUN: interactive Visualization of Uncertain biochemical reaction Networks. - Corinna Vehlow; Jan Hasenauer; Andrei Kramer; Andreas Raue; Sabine Hug; Jens Timmer; Nicole Radde; Fabian J. Theis; Daniel Weiskopf (BMC Bioinform., 2013)

mcmc_clib-an advanced MCMC sampling package for ode models. - Andrei Kramer; Vassilios Stathopoulos 003; Mark A. Girolami; Nicole Radde (Bioinform., 2014)

Hamiltonian Monte Carlo methods for efficient parameter estimation in steady state dynamical systems. - Andrei Kramer; Ben Calderhead; Nicole Radde (BMC Bioinform., 2014)

Uncertainty quantification, propagation and characterization by Bayesian analysis combined with global sensitivity analysis applied to dynamical intracellular pathway models. - Olivia Eriksson; Alexandra Jauhiainen; Sara Maad Sasane; Andrei Kramer; Anu G. Nair; Carolina Sartorius; Jeanette Hellgren Kotaleski (Bioinform., 2019)

Sensitivity Approximation by the Peano-Baker Series. - Olivia Eriksson; Andrei Kramer; Federica Milinanni; Pierre Nyquist (CoRR, 2021)

A Modular Workflow for Model Building, Analysis, and Parameter Estimation in Systems Biology and Neuroscience. - João P. G. Santos; Kadri Pajo; Daniel Trpevski; Andrey Stepaniuk; Olivia Eriksson; Anu G. Nair; Daniel X. Keller; Jeanette Hellgren Kotaleski; Andrei Kramer (Neuroinformatics, 2022)