Structural organization of G-protein-coupled receptors. - Andrei L. Lomize; Irina D. Pogozheva; Henry I. Mosberg (J. Comput. Aided Mol. Des., 1999)

OPM: Orientations of Proteins in Membranes database. - Mikhail A. Lomize; Andrei L. Lomize; Irina D. Pogozheva; Henry I. Mosberg (Bioinform., 2006)

Anisotropic Solvent Model of the Lipid Bilayer. 1. Parameterization of Long-Range Electrostatics and First Solvation Shell Effects. - Andrei L. Lomize; Irina D. Pogozheva; Henry I. Mosberg (J. Chem. Inf. Model., 2011)

Anisotropic Solvent Model of the Lipid Bilayer. 2. Energetics of Insertion of Small Molecules, Peptides, and Proteins in Membranes. - Andrei L. Lomize; Irina D. Pogozheva; Henry I. Mosberg (J. Chem. Inf. Model., 2011)

OPM database and PPM web server: resources for positioning of proteins in membranes. - Mikhail A. Lomize; Irina D. Pogozheva; Hyeon Joo; Henry I. Mosberg; Andrei L. Lomize (Nucleic Acids Res., 2012)

Membranome: a database for proteome-wide analysis of single-pass membrane proteins. - Andrei L. Lomize; Mikhail A. Lomize; Shean R. Krolicki; Irina D. Pogozheva (Nucleic Acids Res., 2017)

Membranome 2.0: database for proteome-wide profiling of bitopic proteins and their dimers. - Andrei L. Lomize; Jacob M. Hage; Irina D. Pogozheva (Bioinform., 2018)

PerMM: A Web Tool and Database for Analysis of Passive Membrane Permeability and Translocation Pathways of Bioactive Molecules. - Andrei L. Lomize; Jacob M. Hage; Kevin Schnitzer; Konstantin Golobokov; Mitchell B. Lafaive; Alexander C. Forsyth; Irina D. Pogozheva (J. Chem. Inf. Model., 2019)

Physics-Based Method for Modeling Passive Membrane Permeability and Translocation Pathways of Bioactive Molecules. - Andrei L. Lomize; Irina D. Pogozheva (J. Chem. Inf. Model., 2019)

Thermodynamics-Based Molecular Modeling of α-Helices in Membranes and Micelles. - Andrei L. Lomize; Kevin Schnitzer; Spencer C. Todd; Irina D. Pogozheva (J. Chem. Inf. Model., 2021)

Comparative Molecular Dynamics Simulation Studies of Realistic Eukaryotic, Prokaryotic, and Archaeal Membranes. - Irina D. Pogozheva; Grant A. Armstrong; Lingyang Kong; Timothy J. Hartnagel; Carly A. Carpino; Stephen E. Gee; Danielle M. Picarello; Amanda S. Rubin; Jumin Lee; Soohyung Park; Andrei L. Lomize; Wonpil Im (J. Chem. Inf. Model., 2022)

Structural Modeling of Cytokine-Receptor-JAK2 Signaling Complexes Using AlphaFold Multimer. - Irina D. Pogozheva; Stanislav Cherepanov; Sang-Jun Park; Malini Raghavan; Wonpil Im; Andrei L. Lomize (J. Chem. Inf. Model., 2023)