Bioinformatics classification and functional analysis of PhoH homologs. - Alexei E. Kazakov; Olga Vassieva; Mikhail S. Gelfand; Andrei Osterman; Ross A. Overbeek (Silico Biol., 2003)

The ERGOTM genome analysis and discovery system. - Ross A. Overbeek; Niels Larsen; Theresa Walunas; Mark D'Souza; Gordon D. Pusch; Evgeni Selkov Jr.; Konstantinos Liolios; Viktor Joukov; Denis Kaznadzey; Iain Anderson; Anamitra Bhattacharyya; Henry Burd; et al. (Nucleic Acids Res., 2003)

Automatic detection of subsystem/pathway variants in genome analysis. - Yuzhen Ye; Andrei Osterman; Ross A. Overbeek; Adam Godzik (ISMB (Supplement of Bioinformatics), 2005)

Comparative Metabolomics of Breast Cancer. - Chen Yang; Adam D. Richardson; Jeffrey W. Smith; Andrei Osterman (Pacific Symposium on Biocomputing, 2007)

CutDB: a proteolytic event database. - Yoshinobu Igarashi; Alexey M. Eroshkin; Svetlana Gramatikova; Kosi Gramatikoff; Ying Zhang 004; Jeffrey W. Smith; Andrei Osterman; Adam Godzik (Nucleic Acids Res., 2007)

The National Microbial Pathogen Database Resource (NMPDR): a genomics platform based on subsystem annotation. - Leslie Klis McNeil; Claudia Reich; Ramy K. Aziz; Daniela Bartels; Matthew Cohoon; Terry Disz; Robert A. Edwards; Svetlana Gerdes; Kaitlyn Hwang; Michael Kubal; Gohar Rem Margaryan; Folker Meyer; et al. (Nucleic Acids Res., 2007)

PMAP: databases for analyzing proteolytic events and pathways. - Yoshinobu Igarashi; Emily Heureux; Kutbuddin S. Doctor; Priti Talwar; Svetlana Gramatikova; Kosi Gramatikoff; Ying Zhang 004; Michael L. Blinov; Salmaz S. Ibragimova; Sarah E. Boyd; Boris I. Ratnikov; Piotr Cieplak; et al. (Nucleic Acids Res., 2009)

Constraint-Based Model of Shewanella oneidensis MR-1 Metabolism: A Tool for Data Analysis and Hypothesis Generation. - Grigoriy E. Pinchuk; Eric A. Hill; Oleg V. Geydebrekht; Jessica De Ingeniis; Xiaolin Zhang 004; Andrei Osterman; James H. Scott; Samantha B. Reed; Margaret F. Romine; Allan E. Konopka; Alexander S. Beliaev; Jim K. Fredrickson; et al. (PLoS Comput. Biol., 2010)

The FGGY Carbohydrate Kinase Family: Insights into the Evolution of Functional Specificities. - Ying Zhang 004; Olga Zagnitko; Irina Rodionova; Andrei Osterman; Adam Godzik (PLoS Comput. Biol., 2011)

Predicting outcomes of steady-state 13C isotope tracing experiments using Monte Carlo sampling. - Jan Schellenberger; Daniel C. Zielinski; Wing Choi; Sunthosh Madireddi; Vasiliy Portnoy; David A. Scott; Jennifer L. Reed; Andrei Osterman; Bernhard Ø. Palsson (BMC Syst. Biol., 2012)

Genome-Scale Modeling of Light-Driven Reductant Partitioning and Carbon Fluxes in Diazotrophic Unicellular Cyanobacterium Cyanothece sp. ATCC 51142. - Trang T. Vu; Sergey M. Stolyar; Grigoriy E. Pinchuk; Eric A. Hill; Leo A. Kucek; Roslyn N. Brown; Mary S. Lipton; Andrei Osterman; Jim K. Fredrickson; Allan E. Konopka; Alexander S. Beliaev; Jennifer L. Reed (PLoS Comput. Biol., 2012)