Estimation of Proportions of SARS-CoV-2 Variants in a Mixed Sequencing Sample. - Askar Gafurov; Andrej Baláz; Tomás Vinar; Brona Brejová (ITAT, 2021)

SnakeLines: integrated set of computational pipelines for sequencing reads. - Jaroslav Budis; Werner Krampl; Marcel Kucharík; Rastislav Hekel; Adrian Goga; Michal Lichvár; David Smolak; Miroslav Böhmer; Andrej Baláz; Frantisek Duris; Juraj Gazdarica; Katarina Soltys; et al. (CoRR, 2021)

Prefix-Free Parsing for Building Large Tunnelled Wheeler Graphs. - Adrián Goga; Andrej Baláz (WABI, 2022)

MARIA: Multiple-alignment r-index with aggregation. - Adrián Goga; Andrej Baláz; Alessia Petescia; Travis Gagie (CoRR, 2022)

VirPool: model-based estimation of SARS-CoV-2 variant proportions in wastewater samples. - Askar Gafurov; Andrej Baláz; Fabian Amman; Kristína Borsová; Viktória Cabanová; Boris Klempa; Andreas Bergthaler; Tomás Vinar; Brona Brejová (BMC Bioinform., 2022)

Prefix-free Graphs and Suffix Array Construction in Sublinear Space. - Andrej Baláz; Alessia Petescia (ITAT, 2023)

Wheeler Maps. - Andrej Baláz; Travis Gagie; Adrián Goga; Simon Heumos; Gonzalo Navarro 001; Alessia Petescia; Jouni Sirén (LATIN (1), 2024)

SnakeLines: integrated set of computational pipelines for sequencing reads. - Jaroslav Budis; Werner Krampl; Marcel Kucharík; Rastislav Hekel; Adrián Goga; Jozef Sitarcík; Michal Lichvár; David Smolak; Miroslav Böhmer; Andrej Baláz; Frantisek Duris; Juraj Gazdarica; et al. (J. Integr. Bioinform., 2024)