pALS: An object-oriented framework for developing parallel cooperative metaheuristics. - Andrés Bernal; Harold Castro (IPDPS Workshops, 2010)

A new method for the comparison of 1H NMR predictors based on tree-similarity of spectra. - Andrés M. Castillo; Andrés Bernal; Luc Patiny; Julien Wist (J. Cheminformatics, 2014)

Topology spatial model for dynamic systems in geographic information systems. - Andrés Bernal; Sergio V. Chapa (Geoinformatics, 2016)

"Ask Ernö": a self-learning tool for assignment and prediction of nuclear magnetic resonance spectra. - Andrés M. Castillo; Andrés Bernal; Reiner Dieden; Luc Patiny; Julien Wist (J. Cheminformatics, 2016)

Gregarious Behavior, Human Colonization and Social Differentiation: An Agent-Based Model. - Sebastian Fajardo; Gert Jan Hofstede; Martijn de Vries; Mark R. Kramer; Andrés Bernal (J. Artif. Soc. Soc. Simul., 2020)