GEOSEQ: a Pascal program to calculate statistical geometry parameters of aligned nucleic acid sequences. - José A. López-Bueno; Andrés Moya (Comput. Appl. Biosci., 1992)

Quantitative characterization of antigens using monoclonal antibody reactivities. - Joaquín Dopazo; Ana Taberner; Andrés Moya (Comput. Appl. Biosci., 1993)

RNA Viruses: a Bridge Between Life and Artificial Life. - Andrés Moya; Esteban Domingo; John J. Holland (ECAL, 1995)

Exploring the Phylogenetic Landscape of {P}roteobacteria using Phylogenomic Approaches. - Iñaki Comas; Andrés Moya; Fernando González-Candelas (Spanish Bioinformatics Conference, 2004)

Proposal of a Minimal Genome for Bacterial Life. - Rosario Gil 002; Francisco J. Silva; Juli Peretó; Andrés Moya (Spanish Bioinformatics Conference, 2004)

The Use of Weighted Least Squares Test Statistic in Branch and Topology Testing. - Borys Wróbel; Rafael Sanjuán; Andrés Moya; Fernando González-Candelas (Spanish Bioinformatics Conference, 2004)

Metagenomics reveals our incomplete knowledge of global diversity. - Miguel Pignatelli; Gabriel Aparício; Ignacio Blanquer; Vicente Hernández; Andrés Moya; Javier Tamames (Bioinform., 2008)

The Gypsy Database (GyDB) of mobile genetic elements. - Carlos Lloréns; Ricardo Futami; Daniela Bezemer; Andrés Moya (Nucleic Acids Res., 2008)

CROC: finding chromosomal clusters in eukaryotic genomes. - Miguel Pignatelli; Florenci Serras; Andrés Moya; Roderic Guigó; Montserrat Corominas (Bioinform., 2009)

JANE: efficient mapping of prokaryotic ESTs and variable length sequence reads on related template genomes. - Chunguang Liang; Alexander Schmid 001; María José López-Sánchez; Andrés Moya; Roy Gross; Jörg Bernhardt; Thomas Dandekar (BMC Bioinform., 2009)

Towards a Simpler Photoautotrophic Cell - Conserved and Variable Genes in Synechococcus Elongatus. - Luis Delaye; Carmen Maria González-Domenech; Andrés Moya (ALIFE, 2010)

The Gypsy Database (GyDB) of mobile genetic elements: release 2.0. - Carlos Lloréns; Ricardo Futami; Laura Covelli; Laura Domínguez-Escribá; Jose M. Viu; Daniel Tamarit; José Aguilar-Rodríguez; Miguel Vicente-Ripolles; Gonzalo Fuster; Guillermo P. Bernet; Florian Maumus; Alfonso Muñoz-Pomer Fuentes; et al. (Nucleic Acids Res., 2011)

Towards a Theory of Life. - Andrés Moya (Int. Conf. on Membrane Computing, 2015)

SymbioGenomesDB: a database for the integration and access to knowledge on host-symbiont relationships. - Mariana Reyes-Prieto; Carlos Vargas-Chávez; Amparo Latorre; Andrés Moya (Database J. Biol. Databases Curation, 2015)

An update on the Symbiotic Genomes Database (SymGenDB): a collection of metadata, genomic, genetic and protein sequences, orthologs and metabolic networks of symbiotic organisms. - Mariana Reyes-Prieto; Carlos Vargas-Chávez; Mercè Llabrés; Pere Palmer; Amparo Latorre; Andrés Moya (Database J. Biol. Databases Curation, 2020)

AI for Dating Stars: A Benchmarking Study for Gyrochronology. - Andrés Moya; Jarmi Recio-Martinez; Roberto Javier López-Sastre (CVPR Workshops, 2021)

A fuzzy Multi-Criteria Decision Making approach for Exo-Planetary Habitability. - Juan Miguel Sánchez-Lozano; Andrés Moya; J. M. Rodríguez-Mozos (Astron. Comput., 2021)

A Dirichlet Autoregressive Model for the Analysis of Microbiota Time-Series Data. - Irene Creus-Martí; Andrés Moya; Francisco-José Santonja (Complex., 2021)

Bayesian Hierarchical Compositional Models for Analysing Longitudinal Abundance Data from Microbiome Studies. - Irene Creus-Martí; Andrés Moya; Francisco-José Santonja (Complex., 2022)

ECA, a Python tool to study the evolution of life. - Javier Falgueras-Cano; Juan-Antonio Falgueras-Cano; Andrés Moya (Softw. Impacts, 2024)

OMD Curation Toolkit: a workflow for in-house curation of public omics datasets. - Samuel Piquer-Esteban; Vicente Arnau; Wladimiro Díaz; Andrés Moya (BMC Bioinform., 2024)

Unveiling the power of uncertainty: A journey into Bayesian Neural Networks for stellar dating. - Víctor Tamames-Rodero; Andrés Moya; Luis Manuel Sarro; Roberto Javier López-Sastre (Astron. Comput., 2025)

Methodology for microbiome data analysis: An overview. - Irene Creus-Martí; Andrés Moya; Francisco-José Santonja (Comput. Biol. Medicine, 2025)