Benchmarking natural-language parsers for biological applications using dependency graphs. - Andrew B. Clegg; Adrian J. Shepherd (BMC Bioinform., 2007)

An integrated approach to the interpretation of Single Amino Acid Polymorphisms within the framework of CATH and Gene3D. - José M. G. Izarzugaza; Anja Baresic; Lisa E. M. McMillan; Corin Yeats; Andrew B. Clegg; Christine A. Orengo; Andrew C. R. Martin; Alfonso Valencia (BMC Bioinform., 2009)

A realistic assessment of methods for extracting gene/protein interactions from free text. - Renata Kabiljo; Andrew B. Clegg; Adrian J. Shepherd (BMC Bioinform., 2009)

Gene3D: merging structure and function for a Thousand genomes. - Jonathan G. Lees; Corin Yeats; Oliver Redfern; Andrew B. Clegg; Christine A. Orengo (Nucleic Acids Res., 2010)

The EMBRACE web service collection. - Steve Pettifer; Jon C. Ison; Matús Kalas; Dave Thorne; Philip McDermott; Inge Jonassen; Ali Liaquat; José María Fernández 001; José Manuel Rodriguez; David G. Pisano; Christophe Blanchet; Mahmut Uludag; et al. (Nucleic Acids Res., 2010)

Finding the "Dark Matter" in Human and Yeast Protein Network Prediction and Modelling. - Juan A. G. Ranea; Ian Morilla; Jonathan G. Lees; Adam James Reid; Corin Yeats; Andrew B. Clegg; Francisca Sánchez-Jiménez; Christine A. Orengo (PLoS Comput. Biol., 2010)

Extending CATH: increasing coverage of the protein structure universe and linking structure with function. - Alison L. Cuff; Ian Sillitoe; Tony E. Lewis; Andrew B. Clegg; Robert Rentzsch; Nicholas Furnham; Marialuisa Pellegrini-Calace; David T. Jones; Janet M. Thornton; Christine A. Orengo (Nucleic Acids Res., 2011)