EMHP: an accurate automated hole masking algorithm for single-particle cryo-EM image processing. - Zachary Berndsen; Charles Bowman; Haerin Jang; Andrew B. Ward (Bioinform., 2017)

CosolvKit: a Versatile Tool for Cosolvent MD Preparation and Analysis. - Niccolò Bruciaferri; Jérôme Eberhardt; Manuel A. Llanos; Johannes R. Loeffler; Matthew Holcomb; Monica L. Fernández-Quintero; Diogo Santos-Martins; Andrew B. Ward; Stefano Forli (J. Chem. Inf. Model., 2024)