The Genome Sequence DataBase version 1.0 (GSDB): from low pass sequences to complete genomes. - Carol Harger; Marian Skupski; Ethan Allen; Christopher Clark; David Crowley; Emily Dickinson; David Easley; Ada Espinosa-Lujan; Andrew D. Farmer; Chris A. Fields; Leandrita Flores; Lynn Harris; et al. (Nucleic Acids Res., 1997)

The Genome Sequence DataBase (GSDB): improving data quality and data access. - Carol Harger; M. P. Skupski; J. Bingham; Andrew D. Farmer; S. Hoisie; Peter T. Hraber; Donald Kiphart; L. Krakowski; Mia McLeod; Jolene Schwertfeger; G. A. Seluja; Adam C. Siepel; et al. (Nucleic Acids Res., 1998)

Establishing a method of vector contamination identification in database sequences. - G. A. Seluja; Andrew D. Farmer; Mia McLeod; Carol Harger; Peter A. Schad (Bioinform., 1999)

The Genome Sequence DataBase: towards an integrated functional genomics resource. - M. P. Skupski; M. Booker; Andrew D. Farmer; M. Harpold; Wen Huang; Jeff T. Inman; Donald Kiphart; C. Kodira; S. Root; Faye D. Schilkey; Jolene Schwertfeger; Adam C. Siepel; et al. (Nucleic Acids Res., 1999)

The Genome Sequence DataBase. - Carol Harger; Guanghong Chen; Andrew D. Farmer; Wen Huang; Jeff T. Inman; Donald Kiphart; Faye D. Schilkey; M. P. Skupski; Jennifer W. Weller (Nucleic Acids Res., 2000)

ISYS: a decentralized, component-based approach to the integration of heterogeneous bioinformatics resources. - Adam C. Siepel; Andrew D. Farmer; Andrew N. Tolopko; Mingzhe Zhuang; Pedro Mendes 001; William D. Beavis; Bruno W. S. Sobral (Bioinform., 2001)

GeneX: An Open Source gene expression database and integrated tool set. - Harry Mangalam; Jason E. Stewart; Jiaye Zhou; Karen Schlauch; Mark E. Waugh; Guanghong Chen; Andrew D. Farmer; Greg Colello; Jennifer W. Weller (IBM Syst. J., 2001)

An integration platform for heterogeneous bioinformatics software components. - Adam C. Siepel; Andrew N. Tolopko; Andrew D. Farmer; Peter A. Steadman; Faye D. Schilkey; B. Dawn Perry; William D. Beavis (IBM Syst. J., 2001)

The Medicago Genome Initiative: a model legume database. - Callum J. Bell; Richard A. Dixon; Andrew D. Farmer; H. Raul Flores; Jeff T. Inman; Robert A. Gonzales; Maria J. Harrison; Nancy L. Paiva; Angela D. Scott; Jennifer W. Weller; Gregory D. May (Nucleic Acids Res., 2001)

The Legume Information System (LIS): an integrated information resource for comparative legume biology. - Michael D. Gonzales; Eric Archuleta; Andrew D. Farmer; Kamal Gajendran; David M. Grant; Randy C. Shoemaker; William D. Beavis; Mark E. Waugh (Nucleic Acids Res., 2005)

Phytophthora functional genomics database (PFGD): functional genomics of phytophthora-plant interactions. - Kamal Gajendran; Michael D. Gonzales; Andrew D. Farmer; Eric Archuleta; Joe Win; Mark E. Waugh; Sophien Kamoun (Nucleic Acids Res., 2006)

Small RNA profiles in soybean primary root tips under water deficit. - Yun Zheng; Vandana Hivrale; Xiaotuo Zhang; Babu Valliyodan; Christine Lelandais-Brière; Andrew D. Farmer; Gregory D. May; Martin Crespi; Henry T. Nguyen; Ramanjulu Sunkar (BMC Syst. Biol., 2016)

Legume information system (LegumeInfo.org): a key component of a set of federated data resources for the legume family. - Sudhansu Dash; Jacqueline D. Campbell; Ethalinda K. S. Cannon; Alan M. Cleary; Wei Huang; Scott R. Kalberer; Vijay Karingula; Alex G. Rice; Jugpreet Singh; Pooja E. Umale; Nathan T. Weeks; Andrew P. Wilkey; et al. (Nucleic Acids Res., 2016)

AgBioData consortium recommendations for sustainable genomics and genetics databases for agriculture. - Lisa C. Harper; Jacqueline D. Campbell; Ethalinda K. S. Cannon; Sook Jung; Monica Poelchau; Ramona L. Walls; Carson M. Andorf; Elizabeth Arnaud; Tanya Z. Berardini; Clayton L. Birkett; Steven B. Cannon; James D. Carson; et al. (Database J. Biol. Databases Curation, 2018)

Genome Context Viewer: visual exploration of multiple annotated genomes using microsynteny. - Alan M. Cleary; Andrew D. Farmer (Bioinform., 2018)

Ten simple rules for developing visualization tools in genomics. - Éloi Durant; Mathieu Rouard; Eric W. Ganko; Cédric Muller; Alan M. Cleary; Andrew D. Farmer; Matthieu G. Conte; François Sabot (PLoS Comput. Biol., 2022)

Data sharing and ontology use among agricultural genetics, genomics, and breeding databases and resources of the Agbiodata Consortium. - Jennifer L. Clarke; Laurel D. Cooper; Monica F. Poelchau; Tanya Z. Berardini; Justin Elser; Andrew D. Farmer; Stephen P. Ficklin; Sunita Kumari; Marie-Angélique Laporte; Rex T. Nelson; Rie Sadohara; Peter Selby; et al. (Database J. Biol. Databases Curation, 2023)

Genome Context Viewer (GCV) version 2: enhanced visual exploration of multiple annotated genomes. - Alan M. Cleary; Andrew D. Farmer (Nucleic Acids Res., 2023)