A collocation-Galerkin finite element model of cardiac action potential propagation. - Jack M. Rogers; Andrew D. McCulloch (IEEE Trans. Biomed. Eng., 1994)

Experimental and Computational Modeling of Cardiac Electromechanical Coupling. - Andrew D. McCulloch; Derrick Sung; Mary Ellen Thomas; Anushka Michailova (FIMH, 2001)

In vivo finite element model-based image analysis of pacemaker lead mechanics. - Walt W. Baxter; Andrew D. McCulloch (Medical Image Anal., 2001)

Static Data Structures. - Michael C. Burton; William G. Griswold; Andrew D. McCulloch; Gary A. Huber (Generic Programming, 2002)

A more efficient search strategy for aging genes based on connectivity. - Luca Ferrarini; Luca Bertelli; Jacob D. Feala; Andrew D. McCulloch; Giovanni Paternostro (Bioinform., 2005)

Multiscale Modeling: Physiome Project Standards, Tools, and Databases. - Peter J. Hunter; Wilfred W. Li; Andrew D. McCulloch; Denis Noble (Computer, 2006)

Computational Methods for Cardiac Electromechanics. - Roy C. P. Kerckhoffs; Sarah N. Healy; Taras P. Usyk; Andrew D. McCulloch (Proc. IEEE, 2006)

Effect of Pacing Site and Infarct Location on Regional Mechanics and Global Hemodynamics in a Model Based Study of Heart Failure. - Roy Kerckhoffs; Andrew D. McCulloch; Jeffrey H. Omens; Lawrence J. Mulligan (FIMH, 2007)

Search Algorithms as a Framework for the Optimization of Drug Combinations. - Diego Calzolari; Stefania Bruschi; Laurence Coquin; Jennifer Schofield; Jacob D. Feala; John C. Reed; Andrew D. McCulloch; Giovanni Paternostro (PLoS Comput. Biol., 2008)

Metabolism as means for hypoxia adaptation: metabolic profiling and flux balance analysis. - Jacob D. Feala; Laurence Coquin; Dan Zhou; Gabriel G. Haddad; Giovanni Paternostro; Andrew D. McCulloch (BMC Syst. Biol., 2009)

Effects of biventricular pacing and scar size in a computational model of the failing heart with left bundle branch block. - Roy Kerckhoffs; Andrew D. McCulloch; Jeffrey H. Omens; Lawrence J. Mulligan (Medical Image Anal., 2009)

Source-to-Source Optimization of CUDA C for GPU Accelerated Cardiac Cell Modeling. - Fred V. Lionetti; Andrew D. McCulloch; Scott B. Baden (Euro-Par (1), 2010)

Numerical Analysis of Ca2+ Signaling in Rat Ventricular Myocytes with Realistic Transverse-Axial Tubular Geometry and Inhibited Sarcoplasmic Reticulum. - Yuhui Cheng; Zeyun Yu; Masahiko Hoshijima; Michael J. Holst; Andrew D. McCulloch; James Andrew McCammon; Anushka Michailova (PLoS Comput. Biol., 2010)

GPU acceleration of optical mapping algorithm for cardiac electrophysiology. - Pingfan Meng; Ali Irturk; Ryan Kastner; Andrew D. McCulloch; Jeffrey H. Omens; Adam Wright (EMBC, 2012)

MAAMD: A Workflow to Standardize Meta-Analyses of Affymetrix Microarray Data. - Zhuohui Gan; Jianwu Wang 001; Nathan Salomonis; Ilkay Altintas; Andrew D. McCulloch; Alexander C. Zambon (HISB, 2012)

An atlas-based geometry pipeline for cardiac Hermite model construction and diffusion tensor reorientation. - Yongjie Zhang 001; Xinghua Liang; Jun Ma; Yiming Jing; Matthew J. Gonzales; Christopher T. Villongco; Adarsh Krishnamurthy; Lawrence R. Frank; Vishal Nigam; Paul Stark; Sanjiv M. Narayan; Andrew D. McCulloch (Medical Image Anal., 2012)

Patient-specific models of cardiac biomechanics. - Adarsh Krishnamurthy; Christopher T. Villongco; Joyce Chuang; Lawrence R. Frank; Vishal Nigam; Ernest Belezzuoli; Paul Stark; David E. Krummen; Sanjiv M. Narayan; Jeffrey H. Omens; Andrew D. McCulloch; Roy Kerckhoffs (J. Comput. Phys., 2013)

A three-dimensional finite element model of human atrial anatomy: New methods for cubic Hermite meshes with extraordinary vertices. - Matthew J. Gonzales; Gregory M. Sturgeon; Adarsh Krishnamurthy; Johan Hake; René Jonas; Paul Stark; Wouter-Jan Rappel; Sanjiv M. Narayan; Yongjie Zhang 001; William Paul Segars; Andrew D. McCulloch (Medical Image Anal., 2013)

Using Kepler for Tool Integration in Microarray Analysis Workflows. - Zhuohui Gan; Jennifer C. Stowe; Ilkay Altintas; Andrew D. McCulloch; Alexander C. Zambon (ICCS, 2014)

Left Ventricular Diastolic and Systolic Material Property Estimation from Image Data. - Adarsh Krishnamurthy; Christopher T. Villongco; Amanda Beck; Jeffrey H. Omens; Andrew D. McCulloch (STACOM, 2014)

MAAMD: a workflow to standardize meta-analyses and comparison of affymetrix microarray data. - Zhuohui Gan; Jianwu Wang 001; Nathan Salomonis; Jennifer C. Stowe; Gabriel G. Haddad; Andrew D. McCulloch; Ilkay Altintas; Alexander C. Zambon (BMC Bioinform., 2014)

Creating shape templates for patient specific biventricular modeling in congenital heart disease. - Kathleen Gilbert; Genevieve Farrar; Brett R. Cowan; Avan Suinesiaputra; Christopher Occleshaw; Beau Pontre; James C. Perry; Sanjeet Hegde; Alison L. Marsden; Jeffrey H. Omens; Andrew D. McCulloch; Alistair A. Young (EMBC, 2015)

Improving assessment of congenital heart disease through rapid patient specific modeling. - Kathleen Gilbert; Genevieve Farrar; Brett R. Cowan; Avan Suinesiaputra; Christopher Occleshaw; Beau Pontre; James C. Perry; Sanjeet Hegde; Jeffrey H. Omens; Andrew D. McCulloch; Alistair A. Young (EMBC, 2016)

Biomechanics simulations using cubic Hermite meshes with extraordinary nodes for isogeometric cardiac modeling. - Adarsh Krishnamurthy; Matthew J. Gonzales; Gregory M. Sturgeon; William Paul Segars; Andrew D. McCulloch (Comput. Aided Geom. Des., 2016)

Cardiac image modelling: Breadth and depth in heart disease. - Avan Suinesiaputra; Andrew D. McCulloch; Martyn P. Nash; Beau Pontre; Alistair A. Young (Medical Image Anal., 2016)

A Computational Modeling and Simulation Approach to Investigate Mechanisms of Subcellular cAMP Compartmentation. - Pei-Chi Yang; Britton W. Boras; Mao-Tsuen Jeng; Steffen S. Docken; Timothy J. Lewis; Andrew D. McCulloch; Robert D. Harvey; Colleen E. Clancy (PLoS Comput. Biol., 2016)

Predictive model identifies key network regulators of cardiomyocyte mechano-signaling. - Philip M. Tan; Kyle S. Buchholz; Jeffrey H. Omens; Andrew D. McCulloch; Jeffrey J. Saucerman (PLoS Comput. Biol., 2017)

An Iterative Diffeomorphic Algorithm for Registration of Subdivision Surfaces: Application to Congenital Heart Disease. - Charlène Alice Mauger; Kathleen Gilbert; Avan Suinesiaputra; Beau Pontre; Jeffrey H. Omens; Andrew D. McCulloch; Alistair A. Young (EMBC, 2018)

Properties of cardiac conduction in a cell-based computational model. - Karoline H. Jæger; Andrew G. Edwards; Andrew D. McCulloch; Aslak Tveito (PLoS Comput. Biol., 2019)

A demonstration of modularity, reuse, reproducibility, portability and scalability for modeling and simulation of cardiac electrophysiology using Kepler Workflows. - Pei-Chi Yang; Shweta Purawat; Pek U. Ieong; Mao-Tsuen Jeng; Kevin R. DeMarco; Igor Vorobyov; Andrew D. McCulloch; Ilkay Altintas; Rommie E. Amaro; Colleen E. Clancy (PLoS Comput. Biol., 2019)

Computational analysis of cardiac structure and function in congenital heart disease: Translating discoveries to clinical strategies. - Nickolas Forsch; Sachin Govil; James C. Perry; Sanjeet Hegde; Alistair A. Young; Jeffrey H. Omens; Andrew D. McCulloch (J. Comput. Sci., 2021)

An Atlas-Based Analysis of Biventricular Mechanics in Tetralogy of Fallot. - Sachin Govil; Sanjeet Hegde; James C. Perry; Jeffrey H. Omens; Andrew D. McCulloch (STACOM@MICCAI, 2022)

MorphiNet: A Graph Subdivision Network for Adaptive Bi-ventricle Surface Reconstruction. - Yu Deng; Yiyang Xu; Linglong Qian; Charlène Alice Mauger; Anastasia Nasopoulou; Steven Williams 001; Michelle C. Williams; Steven A. Niederer; David E. Newby; Andrew D. McCulloch; Jeffrey H. Omens; Kuberan Pushparajah; et al. (CoRR, 2024)

NetSci: A Library for High Performance Biomolecular Simulation Network Analysis Computation. - Andrew M. Stokely; Lane W. Votapka; Marcus T. Hock; Abigail E. Teitgen; James Andrew McCammon; Andrew D. McCulloch; Rommie E. Amaro (J. Chem. Inf. Model., 2024)

A universal biventricular coordinate system incorporating valve annuli: Validation in congenital heart disease. - Lisa R. Pankewitz; Kristian Gregorius Hustad; Sachin Govil; James C. Perry; Sanjeet Hegde; Renxiang Tang; Jeffrey H. Omens; Alistair A. Young; Andrew D. McCulloch; Hermenegild Arevalo (Medical Image Anal., 2024)

Successful cardiac resynchronization therapy reduces negative septal work in patient-specific models of dyssynchronous heart failure. - Amanda Craine; Adarsh Krishnamurthy; Christopher T. Villongco; Kevin Vincent; David E. Krummen; Sanjiv M. Narayan; Roy C. P. Kerckhoffs; Jeffrey H. Omens; Francisco Contijoch; Andrew D. McCulloch (PLoS Comput. Biol., 2024)

An Open-Source End-to-End Pipeline for Generating 3D+t Biventricular Meshes from Cardiac Magnetic Resonance Imaging. - Joshua R. Dillon; Charlène Alice Mauger; Debbie Zhao; Yu Deng; Steffen E. Petersen; Andrew D. McCulloch; Alistair A. Young; Martyn P. Nash (FIMH (2), 2025)

A Pediatric Cardiac Shape Atlas: Insights into the Structure of Young Healthy Hearts. - Anna Qi; Chris Kim; Nathan Young; Xiaoyang Yu; Brendan T. Crabb; Eleanor L. Schuchardt; Sanjeet Hegde; Charlène Alice Mauger; Alistair A. Young; Jeffrey H. Omens; Andrew D. McCulloch; Hari K. Narayan (FIMH (2), 2025)